@COMMENT
LIGANDBOX_ID = D02543-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-05
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.1558 0.5486 -3.2424 C.3 1 LGD 0.1417
2 C2 -0.5825 1.9911 -3.1951 C.3 1 LGD 0.0983
3 C3 0.3423 2.1282 -1.9575 C.3 1 LGD 0.0548
4 C4 1.4575 1.0493 -1.9884 C.3 1 LGD 0.1088
5 C5 0.8478 -0.3677 -2.1539 C.3 1 LGD 0.3010
6 O1 -0.0382 -0.3743 -3.2984 O.3 1 LGD -0.3998
7 O2 0.1055 -0.7135 -0.9685 O.3 1 LGD -0.4720
8 C6 -0.1706 -2.1262 -0.8140 C.3 1 LGD 0.1162
9 C7 0.4543 -2.6005 0.5233 C.3 1 LGD 0.1153
10 C8 -0.2475 -1.9459 1.7399 C.3 1 LGD -0.1159
11 C9 -1.7794 -2.1843 1.7374 C.3 1 LGD 0.0903
12 C10 -2.4503 -1.7893 0.3821 C.3 1 LGD 0.1402
13 C11 -1.7075 -2.3662 -0.8627 C.3 1 LGD 0.1333
14 O3 -2.4708 -0.3528 0.2563 O.3 1 LGD -0.4382
15 C12 -3.3381 0.3507 1.1722 C.3 1 LGD 0.2922
16 C13 -2.0498 0.2907 -4.4788 C.3 1 LGD 0.1513
17 O4 -2.5756 -1.0357 -4.4446 O.3 1 LGD -0.6194
18 O5 -1.6345 2.9540 -3.1268 O.3 1 LGD -0.5893
19 N1 0.9426 3.4755 -1.9116 N.4 1 LGD -0.8085
20 O6 2.3589 1.3121 -3.0672 O.3 1 LGD -0.5816
21 N2 1.8870 -2.2771 0.5393 N.am 1 LGD -0.6115
22 C14 2.8276 -3.0552 1.1987 C.2 1 LGD 0.6216
23 C15 4.3081 -2.6592 1.1016 C.3 1 LGD 0.0937
24 C16 4.5661 -1.2524 1.6949 C.3 1 LGD -0.0988
25 C17 6.0671 -0.8950 1.6831 C.3 1 LGD 0.1006
26 N3 6.2599 0.4420 2.2757 N.4 1 LGD -0.8206
27 O7 -2.5546 0.8802 2.2662 O.3 1 LGD -0.4628
28 C18 -1.4945 1.7935 1.8919 C.3 1 LGD 0.1241
29 C19 -2.1238 3.0307 1.2019 C.3 1 LGD 0.1294
30 C20 -3.0059 2.6038 0.0037 C.3 1 LGD 0.0928
31 C21 -4.0297 1.5243 0.4316 C.3 1 LGD 0.0963
32 C22 -0.7422 2.1882 3.1797 C.3 1 LGD 0.1042
33 N4 -0.1793 0.9813 3.8153 N.4 1 LGD -0.8207
34 O8 -1.0966 3.9153 0.7534 O.3 1 LGD -0.6564
35 O9 -3.6907 3.7397 -0.5228 O.3 1 LGD -0.5784
36 O10 -4.7339 1.0314 -0.7091 O.3 1 LGD -0.5409
37 O11 2.4702 -4.0351 1.8298 O.2 1 LGD -0.5274
38 O12 4.7200 -2.6999 -0.2673 O.3 1 LGD -0.5997
39 N5 -2.0395 -3.6105 2.0105 N.4 1 LGD -0.8194
40 O13 -1.9544 -3.7721 -0.9472 O.3 1 LGD -0.6313
41 H1 -1.7509 0.3693 -2.3380 H 1 LGD 0.0677
42 H2 0.0065 2.1618 -4.1057 H 1 LGD 0.0825
43 H3 -0.2595 1.9845 -1.0577 H 1 LGD 0.1194
44 H4 2.0076 1.0850 -1.0396 H 1 LGD 0.0708
45 H5 1.6568 -1.0925 -2.3067 H 1 LGD 0.1250
46 H6 0.2935 -2.6934 -1.6322 H 1 LGD 0.1090
47 H7 0.3283 -3.6892 0.5862 H 1 LGD 0.1048
48 H8 0.1841 -2.3322 2.6722 H 1 LGD 0.0562
49 H9 -0.0526 -0.8674 1.7309 H 1 LGD 0.0562
50 H10 -2.2286 -1.6029 2.5445 H 1 LGD 0.1012
51 H11 -3.4842 -2.1587 0.3697 H 1 LGD 0.0988
52 H12 -2.1105 -1.8808 -1.7605 H 1 LGD 0.1207
53 H13 -4.1053 -0.3290 1.5628 H 1 LGD 0.1248
54 H14 -2.8752 1.0134 -4.4905 H 1 LGD 0.0643
55 H15 -1.4589 0.4383 -5.3918 H 1 LGD 0.0643
56 H16 -3.0686 -1.1778 -5.2722 H 1 LGD 0.4589
57 H17 -1.5065 3.5885 -3.8546 H 1 LGD 0.4530
58 H18 1.4886 3.5798 -1.0685 H 1 LGD 0.4687
59 H19 0.2102 4.1712 -1.9246 H 1 LGD 0.4687
60 H20 1.9915 0.8916 -3.8658 H 1 LGD 0.4634
61 H21 2.2071 -1.4726 0.0208 H 1 LGD 0.3157
62 H22 4.8808 -3.3951 1.6813 H 1 LGD 0.1148
63 H23 4.0026 -0.4985 1.1295 H 1 LGD 0.0482
64 H24 4.1950 -1.2238 2.7275 H 1 LGD 0.0482
65 H25 6.6282 -1.6331 2.2607 H 1 LGD 0.1432
66 H26 6.4397 -0.8960 0.6560 H 1 LGD 0.1432
67 H27 5.9171 0.4473 3.2264 H 1 LGD 0.4643
68 H28 5.7563 1.1314 1.7354 H 1 LGD 0.4643
69 H29 -0.7953 1.3047 1.2011 H 1 LGD 0.0527
70 H30 -2.7599 3.5474 1.9331 H 1 LGD 0.1034
71 H31 -2.3574 2.1707 -0.7660 H 1 LGD 0.0335
72 H32 -4.7445 1.9840 1.1266 H 1 LGD 0.1436
73 H33 0.0621 2.8870 2.9396 H 1 LGD 0.1409
74 H34 -1.4341 2.6727 3.8721 H 1 LGD 0.1409
75 H35 0.4828 0.5431 3.1914 H 1 LGD 0.4607
76 H36 0.2829 1.2306 4.6790 H 1 LGD 0.4607
77 H37 -1.5507 4.6525 0.3054 H 1 LGD 0.4720
78 H38 -4.3584 3.4041 -1.1482 H 1 LGD 0.4650
79 H39 -4.1348 0.4201 -1.1739 H 1 LGD 0.4138
80 H40 4.6370 -3.6201 -0.5768 H 1 LGD 0.4655
81 H41 -3.0308 -3.7628 2.1322 H 1 LGD 0.4785
82 H42 -1.7206 -4.1633 1.2250 H 1 LGD 0.4785
83 H43 -1.9495 -4.0163 -1.8910 H 1 LGD 0.4843
84 H44 1.5460 3.5987 -2.7134 H 1 LGD 0.4687
85 H45 7.2432 0.6771 2.2778 H 1 LGD 0.4643
86 H46 -0.9303 0.3337 4.0120 H 1 LGD 0.4607
87 H47 -1.5510 -3.8978 2.8469 H 1 LGD 0.4785
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1