@COMMENT
LIGANDBOX_ID = D02543-06
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-06
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -2.7606 2.4446 -0.1692 C.3 1 LGD 0.1474
2 C2 -2.2843 3.9246 -0.1733 C.3 1 LGD 0.1004
3 C3 -1.3298 4.1799 1.0177 C.3 1 LGD 0.0613
4 C4 -0.1767 3.1469 1.0448 C.3 1 LGD 0.0650
5 C5 -0.7361 1.6940 0.9526 C.3 1 LGD 0.3342
6 O1 -1.5853 1.6048 -0.2087 O.3 1 LGD -0.4073
7 O2 0.3446 0.7552 0.7656 O.3 1 LGD -0.4126
8 C6 1.0416 0.3081 1.9521 C.3 1 LGD 0.1220
9 C7 0.8550 -1.2249 2.1085 C.3 1 LGD 0.1178
10 C8 1.5532 -2.0098 0.9703 C.3 1 LGD -0.1201
11 C9 3.0556 -1.6516 0.8382 C.3 1 LGD 0.0903
12 C10 3.2951 -0.1131 0.7267 C.3 1 LGD 0.1431
13 C11 2.5428 0.7035 1.8242 C.3 1 LGD 0.1352
14 O3 2.8421 0.3514 -0.5638 O.3 1 LGD -0.4294
15 C12 3.6203 -0.0808 -1.7021 C.3 1 LGD 0.2966
16 C13 -3.6369 2.1046 -1.4009 C.3 1 LGD 0.1551
17 O4 -4.0642 0.7437 -1.3592 O.3 1 LGD -0.6242
18 O5 -3.3991 4.8124 -0.0842 O.3 1 LGD -0.5756
19 N1 -0.7715 5.5443 0.9345 N.4 1 LGD -0.8127
20 O6 0.5914 3.3407 2.2344 O.3 1 LGD -0.5921
21 N2 -0.5735 -1.5663 2.1430 N.am 1 LGD -0.6111
22 C14 -1.0698 -2.6238 2.8940 C.2 1 LGD 0.6225
23 C15 -2.5820 -2.8892 2.8957 C.3 1 LGD 0.0951
24 C16 -3.1051 -3.2490 1.4842 C.3 1 LGD -0.1036
25 C17 -4.6039 -3.6145 1.5101 C.3 1 LGD 0.1031
26 N3 -5.0494 -3.9607 0.1475 N.4 1 LGD -0.8205
27 O7 2.9993 -1.2404 -2.3054 O.3 1 LGD -0.4722
28 C18 1.6503 -1.0471 -2.7966 C.3 1 LGD 0.1181
29 C19 1.6782 0.0250 -3.9143 C.3 1 LGD 0.1381
30 C20 2.3041 1.3409 -3.3904 C.3 1 LGD 0.0899
31 C21 3.6883 1.0616 -2.7510 C.3 1 LGD 0.0919
32 C22 1.1435 -2.4040 -3.3287 C.3 1 LGD 0.1053
33 N4 1.1324 -3.3938 -2.2347 N.4 1 LGD -0.8215
34 O8 0.3540 0.2712 -4.3850 O.3 1 LGD -0.6128
35 O9 2.4489 2.2684 -4.4655 O.3 1 LGD -0.5759
36 O10 4.2025 2.2479 -2.1453 O.3 1 LGD -0.5499
37 O11 -0.3057 -3.3162 3.5447 O.2 1 LGD -0.5383
38 O12 -3.2654 -1.7383 3.3992 O.3 1 LGD -0.5990
39 N5 3.7771 -2.1710 2.0157 N.4 1 LGD -0.8207
40 O13 3.1851 0.5084 3.0867 O.3 1 LGD -0.6286
41 H1 -3.3341 2.2446 0.7457 H 1 LGD 0.0854
42 H2 -1.7387 4.1106 -1.1080 H 1 LGD 0.0692
43 H3 -1.9016 4.0921 1.9439 H 1 LGD 0.1313
44 H4 0.4630 3.3125 0.1681 H 1 LGD 0.1180
45 H5 -1.3155 1.4323 1.8465 H 1 LGD 0.0562
46 H6 0.6223 0.7939 2.8425 H 1 LGD 0.0831
47 H7 1.3156 -1.5144 3.0618 H 1 LGD 0.0972
48 H8 1.4465 -3.0889 1.1407 H 1 LGD 0.0641
49 H9 1.0462 -1.7926 0.0239 H 1 LGD 0.0641
50 H10 3.4613 -2.1449 -0.0467 H 1 LGD 0.1059
51 H11 4.3695 0.0935 0.8190 H 1 LGD 0.0940
52 H12 2.6052 1.7652 1.5541 H 1 LGD 0.1035
53 H13 4.6390 -0.3334 -1.3840 H 1 LGD 0.1173
54 H14 -4.5136 2.7645 -1.4159 H 1 LGD 0.0637
55 H15 -3.0624 2.2899 -2.3176 H 1 LGD 0.0637
56 H16 -4.6368 0.5968 -2.1328 H 1 LGD 0.4380
57 H17 -3.4501 5.3155 -0.9166 H 1 LGD 0.4526
58 H18 -0.1431 5.6978 1.7115 H 1 LGD 0.4746
59 H19 -1.5238 6.2185 0.9717 H 1 LGD 0.4746
60 H20 0.0005 3.2065 2.9968 H 1 LGD 0.4316
61 H21 -1.2203 -1.0082 1.6044 H 1 LGD 0.3318
62 H22 -2.7600 -3.7436 3.5621 H 1 LGD 0.1104
63 H23 -2.9403 -2.4080 0.7979 H 1 LGD 0.0591
64 H24 -2.5319 -4.1002 1.0941 H 1 LGD 0.0591
65 H25 -4.7664 -4.4669 2.1738 H 1 LGD 0.1380
66 H26 -5.1848 -2.7662 1.8793 H 1 LGD 0.1380
67 H27 -4.5188 -4.7493 -0.1957 H 1 LGD 0.4660
68 H28 -4.9090 -3.1713 -0.4676 H 1 LGD 0.4660
69 H29 0.9927 -0.7090 -1.9857 H 1 LGD 0.0727
70 H30 2.2973 -0.3500 -4.7403 H 1 LGD 0.0912
71 H31 1.6421 1.7641 -2.6232 H 1 LGD 0.0424
72 H32 4.3725 0.7389 -3.5468 H 1 LGD 0.1416
73 H33 0.1339 -2.2889 -3.7293 H 1 LGD 0.1445
74 H34 1.8016 -2.7524 -4.1276 H 1 LGD 0.1445
75 H35 0.5041 -3.0873 -1.5057 H 1 LGD 0.4571
76 H36 0.8302 -4.2920 -2.5863 H 1 LGD 0.4571
77 H37 0.3945 1.0909 -4.9107 H 1 LGD 0.4685
78 H38 3.0873 2.9445 -4.1744 H 1 LGD 0.4538
79 H39 3.7283 2.3652 -1.3027 H 1 LGD 0.4068
80 H40 -2.9976 -1.6162 4.3280 H 1 LGD 0.4571
81 H41 4.7723 -2.0504 1.8905 H 1 LGD 0.4767
82 H42 3.4896 -1.6529 2.8362 H 1 LGD 0.4767
83 H43 3.0823 1.3309 3.5995 H 1 LGD 0.4741
84 H44 -0.2617 5.6581 0.0702 H 1 LGD 0.4746
85 H45 -6.0311 -4.2020 0.1589 H 1 LGD 0.4660
86 H46 2.0663 -3.4769 -1.8574 H 1 LGD 0.4571
87 H47 3.5709 -3.1515 2.1451 H 1 LGD 0.4767
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1