@COMMENT
LIGANDBOX_ID = D02543-07
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-07
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 2.6012 -1.1629 -2.4800 C.3 1 LGD 0.0903
2 C2 2.7186 -2.0913 -3.7220 C.3 1 LGD 0.1031
3 C3 1.3674 -2.7877 -4.0099 C.3 1 LGD 0.0722
4 C4 0.2320 -1.7435 -4.1160 C.3 1 LGD 0.1034
5 C5 0.1925 -0.8371 -2.8584 C.3 1 LGD 0.3107
6 O1 1.4995 -0.2399 -2.6868 O.3 1 LGD -0.4066
7 O2 -0.1264 -1.6217 -1.6868 O.3 1 LGD -0.4709
8 C6 -0.8312 -0.9090 -0.6440 C.3 1 LGD 0.0981
9 C7 -0.3612 -1.4420 0.7347 C.3 1 LGD 0.1249
10 C8 -1.1623 -0.7612 1.8741 C.3 1 LGD -0.1199
11 C9 -2.6903 -0.9603 1.7204 C.3 1 LGD 0.0850
12 C10 -3.2060 -0.5270 0.3111 C.3 1 LGD 0.1404
13 C11 -2.3604 -1.1168 -0.8569 C.3 1 LGD 0.1217
14 O3 -3.1572 0.9119 0.2116 O.3 1 LGD -0.4421
15 C12 -4.0826 1.6180 1.0719 C.3 1 LGD 0.2957
16 C13 3.8882 -0.3281 -2.2616 C.3 1 LGD 0.1474
17 O4 3.7869 0.4544 -1.0761 O.3 1 LGD -0.5992
18 O5 3.7239 -3.0839 -3.5105 O.3 1 LGD -0.5986
19 N1 1.4607 -3.5563 -5.2669 N.4 1 LGD -0.8130
20 O6 -1.0236 -2.3943 -4.3068 O.3 1 LGD -0.5537
21 N2 1.0736 -1.1808 0.9174 N.am 1 LGD -0.6089
22 C14 1.8467 -1.8830 1.8348 C.2 1 LGD 0.6219
23 C15 3.3484 -1.5733 1.9396 C.3 1 LGD 0.0916
24 C16 3.6184 -0.0843 2.2785 C.3 1 LGD -0.1105
25 C17 5.1290 0.2393 2.2967 C.3 1 LGD 0.1049
26 N3 5.3228 1.6805 2.5437 N.4 1 LGD -0.8207
27 O7 -3.3725 2.1371 2.2198 O.3 1 LGD -0.4718
28 C18 -2.3076 3.0719 1.9232 C.3 1 LGD 0.1212
29 C19 -2.9194 4.3149 1.2277 C.3 1 LGD 0.1369
30 C20 -3.7100 3.9029 -0.0395 C.3 1 LGD 0.0913
31 C21 -4.7377 2.7950 0.3017 C.3 1 LGD 0.0897
32 C22 -1.6254 3.4488 3.2548 C.3 1 LGD 0.1037
33 N4 -1.0645 2.2386 3.8857 N.4 1 LGD -0.8213
34 O8 -1.8855 5.2327 0.8761 O.3 1 LGD -0.6127
35 O9 -4.3879 5.0387 -0.5758 O.3 1 LGD -0.5687
36 O10 -5.3646 2.3130 -0.8873 O.3 1 LGD -0.5441
37 O11 1.3295 -2.7406 2.5302 O.2 1 LGD -0.5410
38 O12 3.9853 -1.9330 0.7117 O.3 1 LGD -0.6199
39 N5 -3.0157 -2.3807 1.9503 N.4 1 LGD -0.8197
40 O13 -2.6345 -2.5142 -0.9802 O.3 1 LGD -0.6108
41 H1 2.4162 -1.7761 -1.5888 H 1 LGD 0.0644
42 H2 2.9866 -1.4766 -4.5914 H 1 LGD 0.0773
43 H3 1.1422 -3.4737 -3.1906 H 1 LGD 0.1249
44 H4 0.4349 -1.0982 -4.9808 H 1 LGD 0.1373
45 H5 -0.5586 -0.0510 -3.0032 H 1 LGD 0.1291
46 H6 -0.6020 0.1644 -0.6937 H 1 LGD 0.0866
47 H7 -0.5353 -2.5253 0.7692 H 1 LGD 0.0853
48 H8 -0.8412 -1.1464 2.8500 H 1 LGD 0.0675
49 H9 -0.9399 0.3125 1.8738 H 1 LGD 0.0675
50 H10 -3.2005 -0.3741 2.4869 H 1 LGD 0.1154
51 H11 -4.2463 -0.8564 0.1877 H 1 LGD 0.1069
52 H12 -2.6549 -0.6104 -1.7854 H 1 LGD 0.1085
53 H13 -4.8727 0.9367 1.4109 H 1 LGD 0.1136
54 H14 4.7523 -0.9997 -2.1823 H 1 LGD 0.0854
55 H15 4.0499 0.3244 -3.1289 H 1 LGD 0.0854
56 H16 3.8377 -0.1710 -0.3296 H 1 LGD 0.3952
57 H17 4.5666 -2.7372 -3.8540 H 1 LGD 0.4585
58 H18 0.5702 -3.9923 -5.4634 H 1 LGD 0.4767
59 H19 2.1736 -4.2668 -5.1725 H 1 LGD 0.4767
60 H20 -1.1540 -3.0036 -3.5601 H 1 LGD 0.4168
61 H21 1.5232 -0.4986 0.3239 H 1 LGD 0.3345
62 H22 3.7523 -2.1904 2.7532 H 1 LGD 0.1155
63 H23 3.1139 0.5646 1.5521 H 1 LGD 0.0616
64 H24 3.1844 0.1465 3.2599 H 1 LGD 0.0616
65 H25 5.6252 -0.3377 3.0804 H 1 LGD 0.1364
66 H26 5.5749 -0.0222 1.3342 H 1 LGD 0.1364
67 H27 4.9290 1.9315 3.4398 H 1 LGD 0.4694
68 H28 4.8679 2.2164 1.8173 H 1 LGD 0.4694
69 H29 -1.5669 2.6071 1.2595 H 1 LGD 0.0559
70 H30 -3.6145 4.7972 1.9281 H 1 LGD 0.0918
71 H31 -3.0040 3.5088 -0.7822 H 1 LGD 0.0488
72 H32 -5.5025 3.2314 0.9579 H 1 LGD 0.1420
73 H33 -0.8259 4.1692 3.0678 H 1 LGD 0.1479
74 H34 -2.3579 3.9026 3.9257 H 1 LGD 0.1479
75 H35 -0.3675 1.8305 3.2794 H 1 LGD 0.4555
76 H36 -0.6430 2.4773 4.7728 H 1 LGD 0.4555
77 H37 -2.2749 5.8589 0.2384 H 1 LGD 0.4776
78 H38 -5.0645 4.7034 -1.1917 H 1 LGD 0.4586
79 H39 -4.7068 1.7731 -1.3607 H 1 LGD 0.4102
80 H40 3.9331 -2.9031 0.6268 H 1 LGD 0.4662
81 H41 -4.0181 -2.5038 1.9810 H 1 LGD 0.4764
82 H42 -2.6445 -2.9359 1.1905 H 1 LGD 0.4764
83 H43 -1.9268 -2.8877 -1.5355 H 1 LGD 0.4475
84 H44 1.7029 -2.9410 -6.0303 H 1 LGD 0.4767
85 H45 6.3101 1.8982 2.5438 H 1 LGD 0.4694
86 H46 -1.8088 1.5713 4.0358 H 1 LGD 0.4555
87 H47 -2.6133 -2.6907 2.8239 H 1 LGD 0.4764
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1