@COMMENT
LIGANDBOX_ID = D02543-08
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-08
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.1879 1.6493 -2.9451 C.3 1 LGD 0.1428
2 C2 0.4084 3.0824 -2.9186 C.3 1 LGD 0.0994
3 C3 1.3172 3.2273 -1.6740 C.3 1 LGD 0.0574
4 C4 2.4140 2.1364 -1.6838 C.3 1 LGD 0.1041
5 C5 1.8044 0.7171 -1.8419 C.3 1 LGD 0.3090
6 O1 0.9149 0.7085 -2.9834 O.3 1 LGD -0.3972
7 O2 1.0678 0.3710 -0.6508 O.3 1 LGD -0.4802
8 C6 0.7650 -1.0344 -0.4990 C.3 1 LGD 0.1201
9 C7 1.3943 -1.4896 0.8500 C.3 1 LGD 0.1162
10 C8 0.6460 -0.8696 2.0608 C.3 1 LGD -0.1053
11 C9 -0.8990 -1.0486 2.0211 C.3 1 LGD 0.0816
12 C10 -1.5282 -0.6319 0.6557 C.3 1 LGD 0.1439
13 C11 -0.7807 -1.2290 -0.5742 C.3 1 LGD 0.1292
14 O3 -1.5051 0.8044 0.5372 O.3 1 LGD -0.4301
15 C12 -2.3673 1.5229 1.4460 C.3 1 LGD 0.2909
16 C13 -1.0803 1.3893 -4.1830 C.3 1 LGD 0.1495
17 O4 -1.6239 0.0704 -4.1392 O.3 1 LGD -0.6282
18 O5 -0.6286 4.0636 -2.8821 O.3 1 LGD -0.5934
19 N1 1.9433 4.5629 -1.6447 N.4 1 LGD -0.8091
20 O6 3.1886 2.2094 -0.4877 O.3 1 LGD -0.5726
21 N2 1.4065 -2.9556 0.9727 N.am 1 LGD -0.6203
22 C14 2.2547 -3.7730 0.2401 C.2 1 LGD 0.6304
23 C15 2.0956 -5.2950 0.3763 C.3 1 LGD 0.0906
24 C16 0.7569 -5.7769 -0.2366 C.3 1 LGD -0.0978
25 C17 0.6047 -7.3110 -0.1609 C.3 1 LGD 0.1025
26 N3 -0.6656 -7.7113 -0.7957 N.4 1 LGD -0.8205
27 O7 -1.5798 2.0523 2.5371 O.3 1 LGD -0.4641
28 C18 -0.5131 2.9552 2.1569 C.3 1 LGD 0.1228
29 C19 -1.1355 4.1927 1.4603 C.3 1 LGD 0.1308
30 C20 -2.0206 3.7662 0.2638 C.3 1 LGD 0.0923
31 C21 -3.0507 2.6953 0.6967 C.3 1 LGD 0.0945
32 C22 0.2423 3.3541 3.4420 C.3 1 LGD 0.1059
33 N4 0.8074 2.1508 4.0822 N.4 1 LGD -0.8199
34 O8 -0.1040 5.0700 1.0082 O.3 1 LGD -0.6436
35 O9 -2.6992 4.9039 -0.2668 O.3 1 LGD -0.5748
36 O10 -3.7565 2.1990 -0.4416 O.3 1 LGD -0.5450
37 O11 3.1047 -3.2791 -0.4804 O.2 1 LGD -0.5128
38 O12 2.1616 -5.6581 1.7587 O.3 1 LGD -0.6102
39 N5 -1.2538 -2.4525 2.2980 N.4 1 LGD -0.8256
40 O13 -1.0873 -2.6215 -0.6859 O.3 1 LGD -0.6518
41 H1 -0.7885 1.4933 -2.0402 H 1 LGD 0.0585
42 H2 1.0153 3.2244 -3.8224 H 1 LGD 0.0860
43 H3 0.7090 3.1063 -0.7753 H 1 LGD 0.1134
44 H4 3.0690 2.3147 -2.5466 H 1 LGD 0.1326
45 H5 2.6137 -0.0067 -1.9983 H 1 LGD 0.1388
46 H6 1.2275 -1.6038 -1.3161 H 1 LGD 0.1090
47 H7 2.4349 -1.1401 0.8800 H 1 LGD 0.1109
48 H8 1.0467 -1.2778 2.9976 H 1 LGD 0.0700
49 H9 0.8659 0.2040 2.0818 H 1 LGD 0.0700
50 H10 -1.3354 -0.4400 2.8150 H 1 LGD 0.1083
51 H11 -2.5724 -0.9697 0.6214 H 1 LGD 0.0872
52 H12 -1.1484 -0.7193 -1.4734 H 1 LGD 0.1219
53 H13 -3.1403 0.8528 1.8417 H 1 LGD 0.1145
54 H14 -1.8963 2.1225 -4.2059 H 1 LGD 0.0656
55 H15 -0.4836 1.5207 -5.0947 H 1 LGD 0.0656
56 H16 -2.1065 -0.0748 -4.9725 H 1 LGD 0.4530
57 H17 -0.4827 4.6810 -3.6210 H 1 LGD 0.4522
58 H18 2.5522 4.6247 -0.8400 H 1 LGD 0.4718
59 H19 1.2248 5.2699 -1.5773 H 1 LGD 0.4718
60 H20 2.7575 1.6259 0.1621 H 1 LGD 0.4160
61 H21 0.7916 -3.3967 1.6374 H 1 LGD 0.2868
62 H22 2.9246 -5.7640 -0.1700 H 1 LGD 0.1184
63 H23 -0.0849 -5.2981 0.2805 H 1 LGD 0.0574
64 H24 0.7097 -5.4604 -1.2867 H 1 LGD 0.0574
65 H25 1.4372 -7.7930 -0.6783 H 1 LGD 0.1374
66 H26 0.6074 -7.6319 0.8835 H 1 LGD 0.1374
67 H27 -0.6695 -7.4233 -1.7645 H 1 LGD 0.4679
68 H28 -1.4412 -7.2758 -0.3164 H 1 LGD 0.4679
69 H29 0.1826 2.4565 1.4694 H 1 LGD 0.0547
70 H30 -1.7687 4.7159 2.1893 H 1 LGD 0.1014
71 H31 -1.3754 3.3263 -0.5048 H 1 LGD 0.0355
72 H32 -3.7638 3.1632 1.3881 H 1 LGD 0.1440
73 H33 1.0463 4.0516 3.1974 H 1 LGD 0.1466
74 H34 -0.4481 3.8415 4.1337 H 1 LGD 0.1466
75 H35 1.4759 1.7157 3.4627 H 1 LGD 0.4621
76 H36 1.2666 2.4045 4.9462 H 1 LGD 0.4621
77 H37 -0.5541 5.8140 0.5675 H 1 LGD 0.4708
78 H38 -3.3733 4.5695 -0.8860 H 1 LGD 0.4615
79 H39 -3.1532 1.5971 -0.9130 H 1 LGD 0.4111
80 H40 3.0584 -5.4521 2.0794 H 1 LGD 0.4611
81 H41 -2.2510 -2.5294 2.4410 H 1 LGD 0.4714
82 H42 -0.9977 -3.0171 1.4985 H 1 LGD 0.4714
83 H43 -1.0158 -2.8572 -1.6289 H 1 LGD 0.4674
84 H44 2.4869 4.7098 -2.4832 H 1 LGD 0.4718
85 H45 -0.7706 -8.7158 -0.7497 H 1 LGD 0.4679
86 H46 0.0593 1.4999 4.2781 H 1 LGD 0.4621
87 H47 -0.7733 -2.7740 3.1264 H 1 LGD 0.4714
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1