@COMMENT
LIGANDBOX_ID = D02543-09
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-09
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.2141 2.0003 -2.6155 C.3 1 LGD 0.1430
2 C2 0.3528 3.4460 -2.5550 C.3 1 LGD 0.1034
3 C3 1.3069 3.5876 -1.3433 C.3 1 LGD 0.0595
4 C4 2.4016 2.4941 -1.3743 C.3 1 LGD 0.1040
5 C5 1.7931 1.0782 -1.5508 C.3 1 LGD 0.3084
6 O1 0.9053 1.0833 -2.6908 O.3 1 LGD -0.4013
7 O2 1.0510 0.7112 -0.3690 O.3 1 LGD -0.4761
8 C6 0.8245 -0.7090 -0.2164 C.3 1 LGD 0.1031
9 C7 1.4522 -1.1571 1.1300 C.3 1 LGD 0.1109
10 C8 0.7393 -0.4973 2.3398 C.3 1 LGD -0.1244
11 C9 -0.7920 -0.7328 2.3226 C.3 1 LGD 0.1297
12 C10 -1.4290 -0.3407 0.9557 C.3 1 LGD 0.1464
13 C11 -0.7016 -0.9893 -0.2706 C.3 1 LGD 0.0970
14 O3 -2.8220 -0.7289 1.0038 O.3 1 LGD -0.4837
15 C12 -3.6822 -0.2205 -0.0405 C.3 1 LGD 0.3186
16 C13 -1.1117 1.7561 -3.8528 C.3 1 LGD 0.1507
17 O4 -1.6324 0.4266 -3.8411 O.3 1 LGD -0.6341
18 O5 -0.7068 4.3960 -2.4384 O.3 1 LGD -0.5838
19 N1 1.9422 4.9204 -1.3520 N.4 1 LGD -0.8140
20 O6 3.1838 2.5483 -0.1809 O.3 1 LGD -0.5942
21 N2 2.8817 -0.8198 1.1442 N.am 1 LGD -0.6089
22 C14 3.8288 -1.5887 1.8055 C.2 1 LGD 0.6293
23 C15 5.3044 -1.1735 1.7190 C.3 1 LGD 0.0945
24 C16 5.5407 0.2365 2.3131 C.3 1 LGD -0.1031
25 C17 7.0359 0.6164 2.3039 C.3 1 LGD 0.1026
26 N3 7.2044 1.9591 2.8906 N.4 1 LGD -0.8199
27 O7 -3.8101 -1.2086 -1.0898 O.3 1 LGD -0.4567
28 C18 -4.3401 -2.4931 -0.6786 C.3 1 LGD 0.1242
29 C19 -5.7774 -2.2909 -0.1358 C.3 1 LGD 0.1352
30 C20 -5.7937 -1.2426 1.0043 C.3 1 LGD 0.0925
31 C21 -5.0907 0.0634 0.5491 C.3 1 LGD 0.0844
32 C22 -4.3314 -3.4256 -1.9072 C.3 1 LGD 0.1112
33 N4 -2.9470 -3.5924 -2.3860 N.4 1 LGD -0.8191
34 O8 -6.2937 -3.5333 0.3398 O.3 1 LGD -0.6014
35 O9 -7.1416 -0.9620 1.3804 O.3 1 LGD -0.5657
36 O10 -4.9866 0.9762 1.6425 O.3 1 LGD -0.5531
37 O11 3.4814 -2.5783 2.4270 O.2 1 LGD -0.5340
38 O12 5.7265 -1.2111 0.3530 O.3 1 LGD -0.6013
39 N5 -1.0706 -2.1512 2.6200 N.4 1 LGD -0.8174
40 O13 -0.9078 -2.4062 -0.3092 O.3 1 LGD -0.6419
41 H1 -0.8046 1.8060 -1.7107 H 1 LGD 0.0625
42 H2 0.9192 3.6361 -3.4764 H 1 LGD 0.0804
43 H3 0.7257 3.4789 -0.4253 H 1 LGD 0.1246
44 H4 3.0521 2.6822 -2.2384 H 1 LGD 0.1314
45 H5 2.6055 0.3603 -1.7172 H 1 LGD 0.1269
46 H6 1.3121 -1.2620 -1.0305 H 1 LGD 0.0903
47 H7 1.3378 -2.2459 1.2083 H 1 LGD 0.0861
48 H8 1.1617 -0.8821 3.2771 H 1 LGD 0.0963
49 H9 0.9308 0.5836 2.3339 H 1 LGD 0.0963
50 H10 -1.2493 -0.1305 3.1100 H 1 LGD 0.1335
51 H11 -1.3610 0.7509 0.8589 H 1 LGD 0.1022
52 H12 -1.0985 -0.5423 -1.1909 H 1 LGD 0.1036
53 H13 -3.2670 0.7073 -0.4525 H 1 LGD 0.1071
54 H14 -1.9399 2.4758 -3.8510 H 1 LGD 0.0683
55 H15 -0.5241 1.9219 -4.7649 H 1 LGD 0.0683
56 H16 -2.1348 0.3063 -4.6666 H 1 LGD 0.4470
57 H17 -0.6714 4.9812 -3.2162 H 1 LGD 0.4546
58 H18 2.5726 4.9959 -0.5654 H 1 LGD 0.4727
59 H19 1.2298 5.6341 -1.2832 H 1 LGD 0.4727
60 H20 2.6118 2.2430 0.5463 H 1 LGD 0.4251
61 H21 3.1950 -0.0084 0.6319 H 1 LGD 0.3204
62 H22 5.8820 -1.9015 2.3037 H 1 LGD 0.1120
63 H23 4.9676 0.9824 1.7470 H 1 LGD 0.0638
64 H24 5.1672 0.2598 3.3450 H 1 LGD 0.0638
65 H25 7.6068 -0.1101 2.8864 H 1 LGD 0.1357
66 H26 7.4109 0.6169 1.2777 H 1 LGD 0.1357
67 H27 6.8595 1.9624 3.8406 H 1 LGD 0.4664
68 H28 6.6873 2.6361 2.3471 H 1 LGD 0.4664
69 H29 -3.7096 -2.9308 0.1063 H 1 LGD 0.0591
70 H30 -6.4088 -1.9217 -0.9549 H 1 LGD 0.0871
71 H31 -5.2488 -1.6527 1.8649 H 1 LGD 0.0399
72 H32 -5.6976 0.5194 -0.2441 H 1 LGD 0.1395
73 H33 -4.7442 -4.3993 -1.6336 H 1 LGD 0.1450
74 H34 -4.9433 -2.9934 -2.7017 H 1 LGD 0.1450
75 H35 -2.3871 -4.0060 -1.6539 H 1 LGD 0.4609
76 H36 -2.9324 -4.1875 -3.2028 H 1 LGD 0.4609
77 H37 -7.0799 -3.3230 0.8763 H 1 LGD 0.4733
78 H38 -7.1214 -0.1745 1.9536 H 1 LGD 0.4525
79 H39 -4.3017 0.6295 2.2416 H 1 LGD 0.4032
80 H40 5.6568 -2.1328 0.0450 H 1 LGD 0.4552
81 H41 -2.0707 -2.2859 2.6733 H 1 LGD 0.4714
82 H42 -0.7097 -2.7255 1.8709 H 1 LGD 0.4714
83 H43 -0.2946 -2.7668 -0.9749 H 1 LGD 0.4356
84 H44 2.4645 5.0494 -2.2069 H 1 LGD 0.4727
85 H45 8.1830 2.2124 2.8923 H 1 LGD 0.4664
86 H46 -2.5696 -2.6837 -2.6179 H 1 LGD 0.4609
87 H47 -0.6416 -2.4144 3.4959 H 1 LGD 0.4714
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1