@COMMENT
LIGANDBOX_ID = D02543-11
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-11
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.5385 -1.0678 3.1805 C.3 1 LGD 0.1300
2 C2 0.1563 0.3002 3.8042 C.3 1 LGD 0.1024
3 C3 -0.7308 1.0917 2.8127 C.3 1 LGD 0.0689
4 C4 -1.9616 0.2543 2.3873 C.3 1 LGD 0.1070
5 C5 -1.5461 -1.1500 1.8777 C.3 1 LGD 0.3079
6 O1 -0.6869 -1.7725 2.8608 O.3 1 LGD -0.3945
7 O2 -0.8405 -1.0241 0.6254 O.3 1 LGD -0.4686
8 C6 -0.6610 -2.2646 -0.0972 C.3 1 LGD 0.1192
9 C7 -1.3458 -2.1372 -1.4879 C.3 1 LGD 0.1166
10 C8 -0.5822 -1.1690 -2.4308 C.3 1 LGD -0.1179
11 C9 0.9231 -1.5218 -2.5638 C.3 1 LGD 0.0995
12 C10 1.6143 -1.6196 -1.1701 C.3 1 LGD 0.1416
13 C11 0.8603 -2.5787 -0.1951 C.3 1 LGD 0.1323
14 O3 1.6344 -0.2964 -0.5856 O.3 1 LGD -0.3879
15 C12 2.6798 0.5936 -1.0308 C.3 1 LGD 0.3235
16 C13 1.3619 -1.9630 4.1390 C.3 1 LGD 0.1514
17 O4 1.7091 -3.1919 3.5012 O.3 1 LGD -0.6149
18 O5 1.3267 1.0605 4.1084 O.3 1 LGD -0.6150
19 N1 -1.1813 2.3506 3.4372 N.4 1 LGD -0.8138
20 O6 -2.6999 0.9433 1.3783 O.3 1 LGD -0.5991
21 N2 -2.7276 -1.6681 -1.3104 N.am 1 LGD -0.6050
22 C14 -3.7350 -1.9103 -2.2329 C.2 1 LGD 0.6291
23 C15 -5.1423 -1.3646 -1.9449 C.3 1 LGD 0.0937
24 C16 -5.1535 0.1808 -1.8332 C.3 1 LGD -0.1015
25 C17 -6.5792 0.7269 -1.6053 C.3 1 LGD 0.1012
26 N3 -6.5348 2.1982 -1.5081 N.4 1 LGD -0.8201
27 O7 3.4664 0.9522 0.1242 O.3 1 LGD -0.4717
28 C18 4.5961 1.8060 -0.1574 C.3 1 LGD 0.1244
29 C19 4.0655 3.1557 -0.7063 C.3 1 LGD 0.1397
30 C20 3.1506 2.9347 -1.9357 C.3 1 LGD 0.0804
31 C21 2.0507 1.8880 -1.6234 C.3 1 LGD 0.0702
32 C22 5.3740 2.0142 1.1599 C.3 1 LGD 0.1160
33 N4 5.8728 0.7187 1.6585 N.4 1 LGD -0.8199
34 O8 5.1607 3.9974 -1.0629 O.3 1 LGD -0.5837
35 O9 2.5499 4.1725 -2.3168 O.3 1 LGD -0.5675
36 O10 1.3197 1.6019 -2.8163 O.3 1 LGD -0.5929
37 O11 -3.4949 -2.5563 -3.2386 O.2 1 LGD -0.5350
38 O12 -5.6359 -1.9491 -0.7367 O.3 1 LGD -0.6039
39 N5 1.0587 -2.7961 -3.2944 N.4 1 LGD -0.8213
40 O13 1.0295 -3.9319 -0.6257 O.3 1 LGD -0.6341
41 H1 1.1264 -0.8899 2.2714 H 1 LGD 0.0721
42 H2 -0.4155 0.1187 4.7239 H 1 LGD 0.0812
43 H3 -0.1400 1.3270 1.9248 H 1 LGD 0.1266
44 H4 -2.6023 0.1101 3.2670 H 1 LGD 0.1279
45 H5 -2.4446 -1.7623 1.7336 H 1 LGD 0.1303
46 H6 -1.1476 -3.0859 0.4464 H 1 LGD 0.1008
47 H7 -1.3607 -3.1338 -1.9480 H 1 LGD 0.0904
48 H8 -1.0468 -1.1702 -3.4250 H 1 LGD 0.0967
49 H9 -0.6789 -0.1453 -2.0474 H 1 LGD 0.0967
50 H10 1.4169 -0.7499 -3.1548 H 1 LGD 0.1092
51 H11 2.6435 -1.9830 -1.2893 H 1 LGD 0.0746
52 H12 1.3076 -2.4726 0.7998 H 1 LGD 0.1007
53 H13 3.3174 0.0997 -1.7744 H 1 LGD 0.0461
54 H14 2.2747 -1.4347 4.4414 H 1 LGD 0.0520
55 H15 0.7728 -2.1628 5.0433 H 1 LGD 0.0520
56 H16 2.1067 -3.7713 4.1755 H 1 LGD 0.4530
57 H17 1.4983 0.9721 5.0631 H 1 LGD 0.4566
58 H18 -1.7624 2.8587 2.7848 H 1 LGD 0.4702
59 H19 -0.3759 2.9096 3.6831 H 1 LGD 0.4702
60 H20 -2.1858 0.8660 0.5540 H 1 LGD 0.4311
61 H21 -2.9557 -1.1426 -0.4794 H 1 LGD 0.3154
62 H22 -5.7840 -1.6590 -2.7857 H 1 LGD 0.1092
63 H23 -4.5017 0.5014 -1.0102 H 1 LGD 0.0616
64 H24 -4.7425 0.6125 -2.7550 H 1 LGD 0.0616
65 H25 -7.2255 0.4362 -2.4366 H 1 LGD 0.1360
66 H26 -6.9892 0.3138 -0.6808 H 1 LGD 0.1360
67 H27 -6.1611 2.5863 -2.3631 H 1 LGD 0.4644
68 H28 -5.9458 2.4713 -0.7337 H 1 LGD 0.4644
69 H29 5.2508 1.3318 -0.9006 H 1 LGD 0.0817
70 H30 3.4728 3.6406 0.0807 H 1 LGD 0.0671
71 H31 3.7660 2.5535 -2.7615 H 1 LGD 0.0634
72 H32 1.3708 2.3061 -0.8697 H 1 LGD 0.1051
73 H33 6.2158 2.6887 0.9879 H 1 LGD 0.1395
74 H34 4.7135 2.4607 1.9062 H 1 LGD 0.1395
75 H35 6.5153 0.3200 0.9883 H 1 LGD 0.4680
76 H36 6.3484 0.8496 2.5407 H 1 LGD 0.4680
77 H37 4.8032 4.6923 -1.6455 H 1 LGD 0.4705
78 H38 1.8642 3.9713 -2.9789 H 1 LGD 0.4425
79 H39 1.9648 1.4519 -3.5301 H 1 LGD 0.4212
80 H40 -5.6883 -2.9125 -0.8720 H 1 LGD 0.4588
81 H41 2.0318 -2.9775 -3.4951 H 1 LGD 0.4733
82 H42 0.7002 -3.5476 -2.7192 H 1 LGD 0.4733
83 H43 0.9630 -4.5015 0.1627 H 1 LGD 0.4785
84 H44 -1.7158 2.1501 4.2704 H 1 LGD 0.4702
85 H45 -7.4669 2.5603 -1.3595 H 1 LGD 0.4644
86 H46 5.0918 0.0895 1.7850 H 1 LGD 0.4680
87 H47 0.5382 -2.7534 -4.1595 H 1 LGD 0.4733
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1