@COMMENT
LIGANDBOX_ID = D02543-12
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-12
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.2121 0.5058 -3.0686 C.3 1 LGD 0.1341
2 C2 -0.5974 1.9289 -3.1210 C.3 1 LGD 0.1016
3 C3 0.3907 2.1080 -1.9463 C.3 1 LGD 0.0699
4 C4 1.4559 0.9838 -1.9417 C.3 1 LGD 0.0939
5 C5 0.8222 -0.4326 -2.0479 C.3 1 LGD 0.3083
6 O1 -0.1253 -0.4492 -3.1407 O.3 1 LGD -0.3806
7 O2 0.1554 -0.7805 -0.8139 O.3 1 LGD -0.4954
8 C6 -0.1941 -2.1839 -0.6913 C.3 1 LGD 0.1173
9 C7 0.4338 -2.7548 0.6106 C.3 1 LGD 0.1150
10 C8 -0.2374 -2.1873 1.8899 C.3 1 LGD -0.1143
11 C9 -1.7848 -2.3005 1.8832 C.3 1 LGD 0.0945
12 C10 -2.4266 -1.7768 0.5608 C.3 1 LGD 0.1392
13 C11 -1.7399 -2.3397 -0.7203 C.3 1 LGD 0.1328
14 O3 -2.3347 -0.3357 0.5317 O.3 1 LGD -0.4641
15 C12 -3.2493 0.3646 1.4050 C.3 1 LGD 0.2822
16 C13 -2.1707 0.2246 -4.2520 C.3 1 LGD 0.1523
17 O4 -2.7214 -1.0879 -4.1510 O.3 1 LGD -0.6176
18 O5 -1.6167 2.9253 -3.0402 O.3 1 LGD -0.5965
19 N1 1.0547 3.4222 -2.0495 N.4 1 LGD -0.8222
20 O6 2.2655 1.0777 -0.7685 O.3 1 LGD -0.6445
21 N2 1.8717 -2.4511 0.6216 N.am 1 LGD -0.6126
22 C14 2.7980 -3.1776 1.3547 C.2 1 LGD 0.6244
23 C15 4.2748 -2.7589 1.2852 C.3 1 LGD 0.0913
24 C16 4.5018 -1.3459 1.8792 C.3 1 LGD -0.0963
25 C17 5.9960 -0.9570 1.8704 C.3 1 LGD 0.0996
26 N3 6.1643 0.3829 2.4645 N.4 1 LGD -0.8205
27 O7 -2.5308 1.0155 2.4882 O.3 1 LGD -0.3845
28 C18 -1.6410 2.1241 2.1798 C.3 1 LGD 0.1440
29 C19 -2.4413 3.2049 1.3866 C.3 1 LGD 0.1073
30 C20 -3.1551 2.5993 0.1545 C.3 1 LGD 0.0887
31 C21 -4.0492 1.4157 0.5930 C.3 1 LGD 0.0862
32 C22 -0.3729 1.5802 1.4754 C.3 1 LGD 0.0592
33 N4 0.6683 2.6187 1.3698 N.4 1 LGD -0.8380
34 O8 -1.5985 4.2845 0.9770 O.3 1 LGD -0.6804
35 O9 -3.9598 3.5983 -0.4717 O.3 1 LGD -0.5765
36 O10 -4.6538 0.7992 -0.5452 O.3 1 LGD -0.5437
37 O11 2.4340 -4.1320 2.0198 O.2 1 LGD -0.5142
38 O12 4.7115 -2.7941 -0.0765 O.3 1 LGD -0.6095
39 N5 -2.1575 -3.7135 2.0828 N.4 1 LGD -0.8196
40 O13 -2.0647 -3.7254 -0.8605 O.3 1 LGD -0.6248
41 H1 -1.7638 0.3849 -2.1278 H 1 LGD 0.0675
42 H2 -0.0491 2.0383 -4.0661 H 1 LGD 0.0902
43 H3 -0.1726 2.0693 -1.0143 H 1 LGD 0.0962
44 H4 2.0928 1.1176 -2.8260 H 1 LGD 0.1289
45 H5 1.6168 -1.1620 -2.2472 H 1 LGD 0.1314
46 H6 0.2221 -2.7461 -1.5383 H 1 LGD 0.1060
47 H7 0.2974 -3.8442 0.6009 H 1 LGD 0.1067
48 H8 0.1603 -2.6981 2.7761 H 1 LGD 0.0771
49 H9 0.0404 -1.1371 2.0010 H 1 LGD 0.0771
50 H10 -2.1821 -1.7289 2.7243 H 1 LGD 0.1236
51 H11 -3.4856 -2.0662 0.5334 H 1 LGD 0.0985
52 H12 -2.1336 -1.7968 -1.5875 H 1 LGD 0.1106
53 H13 -3.9597 -0.3503 1.8380 H 1 LGD 0.1248
54 H14 -2.9810 0.9644 -4.2511 H 1 LGD 0.0656
55 H15 -1.6206 0.3293 -5.1960 H 1 LGD 0.0656
56 H16 -3.2216 -1.2597 -4.9689 H 1 LGD 0.4637
57 H17 -1.6896 3.3510 -3.9134 H 1 LGD 0.4682
58 H18 1.7378 3.5231 -1.3128 H 1 LGD 0.4708
59 H19 0.3620 4.1559 -1.9830 H 1 LGD 0.4708
60 H20 2.1223 0.2565 -0.2648 H 1 LGD 0.4398
61 H21 2.2102 -1.6999 0.0414 H 1 LGD 0.2982
62 H22 4.8486 -3.4849 1.8760 H 1 LGD 0.1186
63 H23 3.9241 -0.6036 1.3130 H 1 LGD 0.0492
64 H24 4.1278 -1.3246 2.9110 H 1 LGD 0.0492
65 H25 6.5713 -1.6846 2.4474 H 1 LGD 0.1424
66 H26 6.3699 -0.9495 0.8438 H 1 LGD 0.1424
67 H27 5.8216 0.3810 3.4153 H 1 LGD 0.4637
68 H28 5.6496 1.0643 1.9248 H 1 LGD 0.4637
69 H29 -1.3198 2.5734 3.1280 H 1 LGD 0.1212
70 H30 -3.2134 3.5961 2.0625 H 1 LGD 0.1276
71 H31 -2.4001 2.2311 -0.5507 H 1 LGD 0.0103
72 H32 -4.8376 1.8093 1.2480 H 1 LGD 0.1493
73 H33 0.0291 0.7556 2.0615 H 1 LGD 0.1124
74 H34 -0.6309 1.2131 0.4812 H 1 LGD 0.1124
75 H35 0.9920 2.8683 2.2941 H 1 LGD 0.4636
76 H36 1.4435 2.2778 0.8173 H 1 LGD 0.4636
77 H37 -2.1742 4.9164 0.5072 H 1 LGD 0.4938
78 H38 -4.5933 3.1341 -1.0485 H 1 LGD 0.4633
79 H39 -3.9730 0.2467 -0.9688 H 1 LGD 0.4068
80 H40 4.6566 -3.7173 -0.3835 H 1 LGD 0.4663
81 H41 -3.1578 -3.7924 2.2003 H 1 LGD 0.4775
82 H42 -1.8811 -4.2494 1.2702 H 1 LGD 0.4775
83 H43 -2.0552 -3.9368 -1.8121 H 1 LGD 0.4823
84 H44 1.5254 3.4970 -2.9404 H 1 LGD 0.4708
85 H45 7.1435 0.6350 2.4674 H 1 LGD 0.4637
86 H46 0.2632 3.4414 0.9404 H 1 LGD 0.4636
87 H47 -1.6948 -4.0784 2.9036 H 1 LGD 0.4775
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1