@COMMENT
LIGANDBOX_ID = D02543-13
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-13
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.1468 0.5691 -3.3240 C.3 1 LGD 0.1285
2 C2 -0.5683 2.0089 -3.2915 C.3 1 LGD 0.1015
3 C3 0.3542 2.1620 -2.0580 C.3 1 LGD 0.0712
4 C4 1.4580 1.0776 -2.0679 C.3 1 LGD 0.0992
5 C5 0.8585 -0.3438 -2.2367 C.3 1 LGD 0.3104
6 O1 -0.0311 -0.3543 -3.3768 O.3 1 LGD -0.3853
7 O2 0.1238 -0.7011 -1.0487 O.3 1 LGD -0.4886
8 C6 -0.1531 -2.1136 -0.9030 C.3 1 LGD 0.1201
9 C7 0.4737 -2.5956 0.4312 C.3 1 LGD 0.1138
10 C8 -0.2248 -1.9418 1.6505 C.3 1 LGD -0.1165
11 C9 -1.7580 -2.1729 1.6493 C.3 1 LGD 0.0901
12 C10 -2.4285 -1.7657 0.2974 C.3 1 LGD 0.1410
13 C11 -1.6912 -2.3460 -0.9499 C.3 1 LGD 0.1331
14 O3 -2.4384 -0.3268 0.1781 O.3 1 LGD -0.4444
15 C12 -3.3014 0.3790 1.0977 C.3 1 LGD 0.2944
16 C13 -2.0438 0.3040 -4.5573 C.3 1 LGD 0.1509
17 O4 -2.5712 -1.0213 -4.5147 O.3 1 LGD -0.6169
18 O5 -1.6156 2.9776 -3.2322 O.3 1 LGD -0.6027
19 N1 0.9690 3.5034 -2.0516 N.4 1 LGD -0.8144
20 O6 2.2221 1.1452 -0.8639 O.3 1 LGD -0.6023
21 N2 1.9089 -2.2801 0.4458 N.am 1 LGD -0.6142
22 C14 2.8353 -3.0256 1.1609 C.2 1 LGD 0.6216
23 C15 4.3207 -2.6486 1.0583 C.3 1 LGD 0.0944
24 C16 4.5951 -1.2358 1.6297 C.3 1 LGD -0.1001
25 C17 6.0976 -0.8854 1.5878 C.3 1 LGD 0.1020
26 N3 6.3066 0.4601 2.1552 N.4 1 LGD -0.8207
27 O7 -2.5210 0.8525 2.2210 O.3 1 LGD -0.4544
28 C18 -1.4428 1.7676 1.8976 C.3 1 LGD 0.1261
29 C19 -2.0443 3.0491 1.2596 C.3 1 LGD 0.1418
30 C20 -2.8913 2.6656 0.0194 C.3 1 LGD 0.0910
31 C21 -3.9506 1.5923 0.3762 C.3 1 LGD 0.1007
32 C22 -0.6808 2.0828 3.2032 C.3 1 LGD 0.1031
33 N4 -0.1681 0.8333 3.7975 N.4 1 LGD -0.8213
34 O8 -2.8516 3.7418 2.2162 O.3 1 LGD -0.5848
35 O9 -3.5109 3.8264 -0.5338 O.3 1 LGD -0.5781
36 O10 -4.6252 1.1511 -0.8030 O.3 1 LGD -0.5452
37 O11 2.4620 -3.9655 1.8419 O.2 1 LGD -0.5306
38 O12 4.7320 -2.7149 -0.3100 O.3 1 LGD -0.5995
39 N5 -2.0240 -3.5996 1.9146 N.4 1 LGD -0.8195
40 O13 -1.9456 -3.7505 -1.0367 O.3 1 LGD -0.6311
41 H1 -1.7392 0.3983 -2.4162 H 1 LGD 0.0673
42 H2 0.0275 2.1681 -4.1999 H 1 LGD 0.0841
43 H3 -0.2441 2.0440 -1.1528 H 1 LGD 0.1092
44 H4 2.1182 1.2637 -2.9251 H 1 LGD 0.1356
45 H5 1.6729 -1.0607 -2.3974 H 1 LGD 0.1273
46 H6 0.3082 -2.6766 -1.7258 H 1 LGD 0.1109
47 H7 0.3450 -3.6841 0.4915 H 1 LGD 0.1046
48 H8 0.2051 -2.3309 2.5823 H 1 LGD 0.0548
49 H9 -0.0248 -0.8647 1.6420 H 1 LGD 0.0548
50 H10 -2.2034 -1.5947 2.4607 H 1 LGD 0.1031
51 H11 -3.4651 -2.1275 0.2851 H 1 LGD 0.0998
52 H12 -2.0931 -1.8571 -1.8463 H 1 LGD 0.1212
53 H13 -4.0940 -0.2892 1.4557 H 1 LGD 0.1257
54 H14 -2.8687 1.0273 -4.5723 H 1 LGD 0.0620
55 H15 -1.4544 0.4455 -5.4723 H 1 LGD 0.0620
56 H16 -3.0605 -1.1696 -5.3435 H 1 LGD 0.4596
57 H17 -1.7748 3.3013 -4.1371 H 1 LGD 0.4684
58 H18 1.5743 3.5930 -1.2473 H 1 LGD 0.4713
59 H19 0.2421 4.2049 -2.0135 H 1 LGD 0.4713
60 H20 1.6960 0.6981 -0.1767 H 1 LGD 0.4111
61 H21 2.2451 -1.5194 -0.1261 H 1 LGD 0.3182
62 H22 4.8853 -3.3820 1.6489 H 1 LGD 0.1149
63 H23 4.0257 -0.4863 1.0646 H 1 LGD 0.0505
64 H24 4.2415 -1.1925 2.6680 H 1 LGD 0.0505
65 H25 6.6656 -1.6169 2.1670 H 1 LGD 0.1423
66 H26 6.4524 -0.9040 0.5546 H 1 LGD 0.1423
67 H27 5.9869 0.4808 3.1136 H 1 LGD 0.4647
68 H28 5.7911 1.1419 1.6163 H 1 LGD 0.4647
69 H29 -0.7499 1.3022 1.1851 H 1 LGD 0.0383
70 H30 -1.2227 3.6996 0.9335 H 1 LGD 0.0366
71 H31 -2.2158 2.2316 -0.7261 H 1 LGD 0.0181
72 H32 -4.6804 2.0402 1.0633 H 1 LGD 0.1510
73 H33 0.1495 2.7610 2.9962 H 1 LGD 0.1434
74 H34 -1.3599 2.5649 3.9101 H 1 LGD 0.1434
75 H35 0.4833 0.3927 3.1644 H 1 LGD 0.4601
76 H36 0.2937 1.0336 4.6740 H 1 LGD 0.4601
77 H37 -3.2976 4.4649 1.7385 H 1 LGD 0.4743
78 H38 -4.1944 3.5141 -1.1543 H 1 LGD 0.4645
79 H39 -4.0406 0.5088 -1.2438 H 1 LGD 0.4119
80 H40 4.6435 -3.6396 -0.6041 H 1 LGD 0.4645
81 H41 -3.0154 -3.7477 2.0405 H 1 LGD 0.4788
82 H42 -1.7123 -4.1489 1.1238 H 1 LGD 0.4788
83 H43 -1.9533 -3.9914 -1.9813 H 1 LGD 0.4848
84 H44 1.5140 3.6359 -2.8916 H 1 LGD 0.4713
85 H45 7.2901 0.6932 2.1298 H 1 LGD 0.4647
86 H46 -0.9455 0.2089 3.9642 H 1 LGD 0.4601
87 H47 -1.5326 -3.8952 2.7464 H 1 LGD 0.4788
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1