@COMMENT
LIGANDBOX_ID = D02543-15
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02543
NAME = Amikacin_(USP/INN)
MOLECULAR_FORMULA = C22H43N5O13
MOLECULAR_WEIGHT = 585.608
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 17
NUM_OF_ACCEPTOR = 13
NUM_OF_CHIRAL_ATOMS = 16
TPSA = 331.9400
HOMO = -19.3450
LUMO = -10.6596
mLOGPA = -7.435
mLOGS = 4.854
mLOGD = -4.343
@MOLECULE
D02543-15
87 89 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.1392 0.5259 -3.3335 C.3 1 LGD 0.1397
2 C2 -0.5581 1.9653 -3.2935 C.3 1 LGD 0.1010
3 C3 0.3526 2.1123 -2.0499 C.3 1 LGD 0.0553
4 C4 1.4556 1.0272 -2.0565 C.3 1 LGD 0.0998
5 C5 0.8533 -0.3918 -2.2300 C.3 1 LGD 0.3101
6 O1 -0.0246 -0.3994 -3.3788 O.3 1 LGD -0.3854
7 O2 0.1037 -0.7436 -1.0501 O.3 1 LGD -0.4872
8 C6 -0.1707 -2.1555 -0.9000 C.3 1 LGD 0.1195
9 C7 0.4577 -2.6302 0.4353 C.3 1 LGD 0.1128
10 C8 -0.2397 -1.9711 1.6528 C.3 1 LGD -0.1149
11 C9 -1.7729 -2.2042 1.6537 C.3 1 LGD 0.0889
12 C10 -2.4465 -1.8096 0.2993 C.3 1 LGD 0.1405
13 C11 -1.7079 -2.3913 -0.9457 C.3 1 LGD 0.1339
14 O3 -2.4666 -0.3726 0.1715 O.3 1 LGD -0.4272
15 C12 -3.3342 0.3297 1.0859 C.3 1 LGD 0.2903
16 C13 -2.0277 0.2638 -4.5733 C.3 1 LGD 0.1534
17 O4 -2.5515 -1.0634 -4.5398 O.3 1 LGD -0.6176
18 O5 -1.6054 2.9345 -3.2446 O.3 1 LGD -0.5916
19 N1 0.9717 3.4512 -2.0238 N.4 1 LGD -0.8108
20 O6 2.2149 1.0918 -0.8492 O.3 1 LGD -0.6013
21 N2 1.8921 -2.3115 0.4452 N.am 1 LGD -0.6141
22 C14 2.8284 -3.0754 1.1270 C.2 1 LGD 0.6219
23 C15 4.3102 -2.6845 1.0262 C.3 1 LGD 0.0946
24 C16 4.5716 -1.2754 1.6122 C.3 1 LGD -0.1007
25 C17 6.0720 -0.9163 1.5894 C.3 1 LGD 0.1019
26 N3 6.2652 0.4256 2.1706 N.4 1 LGD -0.8207
27 O7 -2.5506 0.8638 2.1808 O.3 1 LGD -0.4719
28 C18 -1.4841 1.7706 1.8050 C.3 1 LGD 0.1236
29 C19 -2.1010 3.0072 1.1000 C.3 1 LGD 0.1272
30 C20 -2.9876 2.5652 -0.0918 C.3 1 LGD 0.0853
31 C21 -4.0310 1.4993 0.3431 C.3 1 LGD 0.1024
32 C22 -0.7335 2.1687 3.0927 C.3 1 LGD 0.1037
33 N4 -0.1824 0.9617 3.7389 N.4 1 LGD -0.8202
34 O8 -1.0635 3.8711 0.6363 O.3 1 LGD -0.6526
35 O9 -3.6344 3.6938 -0.6827 O.3 1 LGD -0.5753
36 O10 -5.0109 2.0820 1.2065 O.3 1 LGD -0.5255
37 O11 2.4664 -4.0393 1.7797 O.2 1 LGD -0.5293
38 O12 4.7208 -2.7328 -0.3431 O.3 1 LGD -0.5989
39 N5 -2.0363 -3.6294 1.9289 N.4 1 LGD -0.8193
40 O13 -1.9587 -3.7967 -1.0279 O.3 1 LGD -0.6319
41 H1 -1.7393 0.3539 -2.4309 H 1 LGD 0.0710
42 H2 0.0450 2.1222 -4.1975 H 1 LGD 0.0845
43 H3 -0.2555 1.9896 -1.1514 H 1 LGD 0.1185
44 H4 2.1196 1.2130 -2.9108 H 1 LGD 0.1345
45 H5 1.6666 -1.1121 -2.3812 H 1 LGD 0.1266
46 H6 0.2911 -2.7204 -1.7211 H 1 LGD 0.1108
47 H7 0.3295 -3.7185 0.5005 H 1 LGD 0.1050
48 H8 0.1920 -2.3579 2.5849 H 1 LGD 0.0545
49 H9 -0.0410 -0.8933 1.6429 H 1 LGD 0.0545
50 H10 -2.2186 -1.6205 2.4611 H 1 LGD 0.1006
51 H11 -3.4808 -2.1781 0.2897 H 1 LGD 0.0985
52 H12 -2.1111 -1.9055 -1.8434 H 1 LGD 0.1239
53 H13 -4.0989 -0.3526 1.4771 H 1 LGD 0.1277
54 H14 -2.8545 0.9850 -4.5891 H 1 LGD 0.0627
55 H15 -1.4337 0.4115 -5.4842 H 1 LGD 0.0627
56 H16 -3.0531 -1.2023 -5.3629 H 1 LGD 0.4575
57 H17 -1.4941 3.5338 -4.0043 H 1 LGD 0.4542
58 H18 1.5761 3.5228 -1.2168 H 1 LGD 0.4690
59 H19 0.2482 4.1540 -1.9650 H 1 LGD 0.4690
60 H20 1.6574 0.7048 -0.1506 H 1 LGD 0.4091
61 H21 2.2192 -1.5291 -0.1022 H 1 LGD 0.3182
62 H22 4.8818 -3.4190 1.6088 H 1 LGD 0.1141
63 H23 4.0042 -0.5242 1.0475 H 1 LGD 0.0509
64 H24 4.2069 -1.2428 2.6470 H 1 LGD 0.0509
65 H25 6.6377 -1.6491 2.1693 H 1 LGD 0.1422
66 H26 6.4386 -0.9241 0.5602 H 1 LGD 0.1422
67 H27 5.9298 0.4370 3.1238 H 1 LGD 0.4644
68 H28 5.7547 1.1089 1.6288 H 1 LGD 0.4644
69 H29 -0.7846 1.2727 1.1211 H 1 LGD 0.0511
70 H30 -2.7269 3.5450 1.8242 H 1 LGD 0.0951
71 H31 -2.3376 2.0962 -0.8390 H 1 LGD 0.0403
72 H32 -4.5243 1.0966 -0.5508 H 1 LGD 0.1294
73 H33 0.0771 2.8595 2.8508 H 1 LGD 0.1406
74 H34 -1.4239 2.6631 3.7795 H 1 LGD 0.1406
75 H35 0.4809 0.5151 3.1224 H 1 LGD 0.4613
76 H36 0.2763 1.2131 4.6039 H 1 LGD 0.4613
77 H37 -1.5087 4.6078 0.1786 H 1 LGD 0.4717
78 H38 -4.3312 3.3591 -1.2748 H 1 LGD 0.4601
79 H39 -4.5391 2.5582 1.9118 H 1 LGD 0.4182
80 H40 4.6365 -3.6544 -0.6480 H 1 LGD 0.4643
81 H41 -3.0276 -3.7786 2.0542 H 1 LGD 0.4785
82 H42 -1.7222 -4.1836 1.1424 H 1 LGD 0.4785
83 H43 -1.9648 -4.0400 -1.9719 H 1 LGD 0.4843
84 H44 1.5171 3.5971 -2.8613 H 1 LGD 0.4690
85 H45 7.2477 0.6640 2.1630 H 1 LGD 0.4644
86 H46 -0.9386 0.3201 3.9351 H 1 LGD 0.4613
87 H47 -1.5455 -3.9179 2.7635 H 1 LGD 0.4785
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 5 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 10 11 1
12 11 12 1
13 12 13 1
14 8 13 1
15 12 14 1
16 14 15 1
17 1 16 1
18 16 17 1
19 2 18 1
20 3 19 1
21 4 20 1
22 9 21 1
23 21 22 am
24 22 23 1
25 23 24 1
26 24 25 1
27 25 26 1
28 15 27 1
29 27 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 15 31 1
34 28 32 1
35 32 33 1
36 29 34 1
37 30 35 1
38 31 36 1
39 22 37 2
40 23 38 1
41 11 39 1
42 13 40 1
43 1 41 1
44 2 42 1
45 3 43 1
46 4 44 1
47 5 45 1
48 8 46 1
49 9 47 1
50 10 48 1
51 10 49 1
52 11 50 1
53 12 51 1
54 13 52 1
55 15 53 1
56 16 54 1
57 16 55 1
58 17 56 1
59 18 57 1
60 19 58 1
61 19 59 1
62 20 60 1
63 21 61 1
64 23 62 1
65 24 63 1
66 24 64 1
67 25 65 1
68 25 66 1
69 26 67 1
70 26 68 1
71 28 69 1
72 29 70 1
73 30 71 1
74 31 72 1
75 32 73 1
76 32 74 1
77 33 75 1
78 33 76 1
79 34 77 1
80 35 78 1
81 36 79 1
82 38 80 1
83 39 81 1
84 39 82 1
85 40 83 1
86 19 84 1
87 26 85 1
88 33 86 1
89 39 87 1