@COMMENT
LIGANDBOX_ID = D02554-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D02554
NAME = Rifaximin_(JAN/USAN/INN)_Xifaxan_(TN)
MOLECULAR_FORMULA = C43H51N3O11
MOLECULAR_WEIGHT = 785.891
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 12
NUM_OF_CHIRAL_ATOMS = 9
TPSA = 198.3800
HOMO = -7.8171
LUMO = -0.9365
mLOGD = 2.201
mLOGPA = -6.446
mLOGS = -3.106
@MOLECULE
D02554-01
108 113 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1910 -0.0920 2.8260 C.3 1 LGD 0.1560
2 C2 2.6970 -0.5350 2.7000 C.3 1 LGD -0.0835
3 O1 1.6270 2.9240 2.8960 O.3 1 LGD -0.6144
4 C3 1.7880 2.1390 4.0810 C.3 1 LGD 0.1465
5 C4 0.8640 0.8680 4.0320 C.3 1 LGD -0.0828
6 C5 2.7410 4.1040 5.3150 C.2 1 LGD -0.1570
7 C6 1.6230 3.0690 5.3320 C.3 1 LGD -0.0660
8 C7 6.7480 3.0250 4.1080 C.2 1 LGD 0.6591
9 C8 6.3850 4.3560 4.7190 C.2 1 LGD -0.1778
10 C9 5.1720 4.6800 5.2560 C.2 1 LGD -0.0483
11 C10 4.0430 3.7630 5.4090 C.2 1 LGD -0.1476
12 C11 1.6300 2.3010 6.6810 C.3 1 LGD -0.0830
13 C12 -0.6480 1.2330 4.0570 C.3 1 LGD -0.0849
14 O2 0.7740 0.5190 1.6040 O.3 1 LGD -0.6054
15 C13 7.4850 5.4170 4.6790 C.3 1 LGD -0.0628
16 O3 5.9190 2.1460 3.9360 O.2 1 LGD -0.5719
17 N1 8.0480 2.7870 3.6690 N.am 1 LGD -0.4803
18 C14 2.8940 -1.5190 1.4870 C.3 1 LGD 0.1605
19 O4 2.1540 -2.7280 1.7910 O.3 1 LGD -0.4479
20 C15 4.3790 -1.9110 1.1570 C.3 1 LGD -0.0580
21 C16 8.4250 1.5380 3.1810 C.ar 1 LGD 0.0211
22 C17 8.2330 0.3470 3.8980 C.ar 1 LGD -0.0730
23 C18 8.9460 1.4230 1.8730 C.ar 1 LGD 0.1268
24 C19 9.1030 0.1350 1.2510 C.ar 1 LGD -0.1271
25 C20 8.7440 -1.0470 1.9840 C.ar 1 LGD 0.1386
26 C21 8.3680 -0.8970 3.3380 C.ar 1 LGD 0.0717
27 C22 9.5530 0.0010 -0.1060 C.ar 1 LGD 0.1925
28 C23 9.5750 -1.2570 -0.7460 C.ar 1 LGD -0.2022
29 C24 9.1460 -2.3740 -0.0250 C.ar 1 LGD 0.1991
30 C25 8.7550 -2.2920 1.3020 C.ar 1 LGD -0.2616
31 O5 9.2040 2.5840 1.1940 O.3 1 LGD -0.5104
32 O6 9.9490 1.0870 -0.8430 O.3 1 LGD -0.5240
33 C26 3.2490 -1.1360 4.0290 C.3 1 LGD -0.0868
34 C27 1.2810 -3.2700 0.8880 C.2 1 LGD 0.6360
35 C28 0.6210 -4.5250 1.4480 C.3 1 LGD -0.1506
36 O7 1.0510 -2.8240 -0.2230 O.2 1 LGD -0.5211
37 C29 4.4670 -2.7990 -0.1300 C.3 1 LGD 0.2042
38 O8 4.2000 -1.9720 -1.2820 O.3 1 LGD -0.4191
39 C30 5.8380 -3.4340 -0.2750 C.2 1 LGD -0.2808
40 C31 5.2970 -0.6530 1.0530 C.3 1 LGD -0.0818
41 C32 3.9410 -2.6890 -2.5020 C.3 1 LGD 0.1255
42 C33 6.1000 -4.7270 -0.0360 C.2 1 LGD 0.0405
43 O9 7.3550 -5.2910 0.0130 O.3 1 LGD -0.3209
44 O10 8.9710 -3.6240 -0.5750 O.3 1 LGD -0.3183
45 C34 8.5240 -4.5420 0.4480 C.3 1 LGD 0.2475
46 C35 8.2320 -3.6450 1.6640 C.2 1 LGD 0.5527
47 C36 9.6730 -5.5320 0.7270 C.3 1 LGD -0.0780
48 C37 10.0010 -1.3920 -2.2110 C.3 1 LGD -0.0466
49 N2 8.1130 -1.8910 4.2390 N.ar 1 LGD -0.2437
50 C38 7.8240 -1.2030 5.3470 C.ar 1 LGD -0.0218
51 N3 7.8290 0.1600 5.1900 N.ar 1 LGD 0.0644
52 O11 7.4390 -3.9220 2.5480 O.2 1 LGD -0.4398
53 C39 7.5940 -1.8550 6.5850 C.ar 1 LGD -0.0875
54 C40 7.4860 -1.0030 7.6640 C.ar 1 LGD -0.0703
55 C41 7.7390 0.4200 7.5110 C.ar 1 LGD -0.1687
56 C42 8.0310 1.0110 6.2800 C.ar 1 LGD -0.0607
57 C43 7.2350 -1.5270 9.0550 C.3 1 LGD -0.0514
58 H1 0.5980 -1.0040 2.9750 H 1 LGD 0.0658
59 H2 3.2770 0.3700 2.4840 H 1 LGD 0.0677
60 H3 2.2340 3.6820 2.9690 H 1 LGD 0.4147
61 H4 2.8200 1.7720 4.1100 H 1 LGD 0.0497
62 H5 1.0470 0.2860 4.9430 H 1 LGD 0.0564
63 H6 2.4410 5.1350 5.1360 H 1 LGD 0.1225
64 H7 0.6620 3.5930 5.2550 H 1 LGD 0.0643
65 H8 4.9910 5.6950 5.6060 H 1 LGD 0.1320
66 H9 4.2930 2.7190 5.5770 H 1 LGD 0.1513
67 H10 0.7220 1.6980 6.8010 H 1 LGD 0.0384
68 H11 2.4970 1.6310 6.7540 H 1 LGD 0.0384
69 H12 1.6720 3.0030 7.5230 H 1 LGD 0.0384
70 H13 -0.9170 1.8950 3.2240 H 1 LGD 0.0387
71 H14 -1.2650 0.3280 3.9820 H 1 LGD 0.0387
72 H15 -0.9190 1.7400 4.9910 H 1 LGD 0.0387
73 H16 0.9570 1.4740 1.7020 H 1 LGD 0.4275
74 H17 7.8050 5.6160 3.6490 H 1 LGD 0.0454
75 H18 7.1510 6.3710 5.1060 H 1 LGD 0.0454
76 H19 8.3650 5.0950 5.2500 H 1 LGD 0.0454
77 H20 8.6150 3.5860 3.4260 H 1 LGD 0.3309
78 H21 2.4810 -1.0290 0.5960 H 1 LGD 0.0951
79 H22 4.7590 -2.5250 1.9830 H 1 LGD 0.0697
80 H23 9.5280 2.3350 0.3060 H 1 LGD 0.4565
81 H24 10.1980 0.7860 -1.7350 H 1 LGD 0.4574
82 H25 2.6530 -2.0010 4.3480 H 1 LGD 0.0366
83 H26 4.2910 -1.4600 3.9240 H 1 LGD 0.0366
84 H27 3.2370 -0.3990 4.8400 H 1 LGD 0.0366
85 H28 1.3780 -5.3020 1.6130 H 1 LGD 0.0650
86 H29 0.1390 -4.2980 2.4070 H 1 LGD 0.0650
87 H30 -0.1350 -4.9030 0.7490 H 1 LGD 0.0650
88 H31 3.7170 -3.5960 -0.0650 H 1 LGD 0.0351
89 H32 6.6210 -2.7450 -0.5700 H 1 LGD 0.1411
90 H33 5.4690 -0.2070 2.0390 H 1 LGD 0.0413
91 H34 6.2800 -0.8980 0.6390 H 1 LGD 0.0413
92 H35 4.8450 0.1090 0.4050 H 1 LGD 0.0413
93 H36 4.8090 -3.2970 -2.7860 H 1 LGD 0.0311
94 H37 3.0690 -3.3450 -2.3790 H 1 LGD 0.0311
95 H38 3.7310 -1.9810 -3.3120 H 1 LGD 0.0311
96 H39 5.3150 -5.4290 0.2350 H 1 LGD 0.1622
97 H40 9.4090 -6.2050 1.5530 H 1 LGD 0.0627
98 H41 9.8830 -6.1430 -0.1600 H 1 LGD 0.0627
99 H42 10.5900 -4.9980 1.0030 H 1 LGD 0.0627
100 H43 11.0170 -1.0040 -2.3610 H 1 LGD 0.0507
101 H44 10.0000 -2.4340 -2.5520 H 1 LGD 0.0507
102 H45 9.3240 -0.8320 -2.8680 H 1 LGD 0.0507
103 H46 7.5390 -2.9340 6.6700 H 1 LGD 0.1762
104 H47 7.7490 1.0420 8.3990 H 1 LGD 0.1441
105 H48 8.2980 2.0460 6.1200 H 1 LGD 0.1842
106 H49 6.7790 -2.5250 9.0320 H 1 LGD 0.0470
107 H50 8.1720 -1.5990 9.6190 H 1 LGD 0.0470
108 H51 6.5560 -0.8670 9.6090 H 1 LGD 0.0470
@BOND
1 1 2 1
2 3 4 1
3 4 5 1
4 1 5 1
5 6 7 1
6 4 7 1
7 8 9 1
8 9 10 2
9 10 11 1
10 6 11 2
11 7 12 1
12 5 13 1
13 1 14 1
14 9 15 1
15 8 16 2
16 8 17 am
17 2 18 1
18 18 19 1
19 18 20 1
20 17 21 1
21 21 22 ar
22 21 23 ar
23 23 24 ar
24 24 25 ar
25 25 26 ar
26 24 27 1
27 27 28 2
28 28 29 1
29 29 30 2
30 25 30 1
31 23 31 1
32 27 32 1
33 2 33 1
34 19 34 1
35 34 35 1
36 34 36 2
37 22 26 ar
38 20 37 1
39 37 38 1
40 37 39 1
41 20 40 1
42 38 41 1
43 39 42 2
44 42 43 1
45 29 44 1
46 44 45 1
47 43 45 1
48 30 46 1
49 45 46 1
50 45 47 1
51 28 48 1
52 26 49 1
53 50 51 1
54 22 51 1
55 46 52 2
56 49 50 2
57 50 53 1
58 53 54 2
59 54 55 1
60 55 56 2
61 51 56 1
62 54 57 1
63 1 58 1
64 2 59 1
65 3 60 1
66 4 61 1
67 5 62 1
68 6 63 1
69 7 64 1
70 10 65 1
71 11 66 1
72 12 67 1
73 12 68 1
74 12 69 1
75 13 70 1
76 13 71 1
77 13 72 1
78 14 73 1
79 15 74 1
80 15 75 1
81 15 76 1
82 17 77 1
83 18 78 1
84 20 79 1
85 31 80 1
86 32 81 1
87 33 82 1
88 33 83 1
89 33 84 1
90 35 85 1
91 35 86 1
92 35 87 1
93 37 88 1
94 39 89 1
95 40 90 1
96 40 91 1
97 40 92 1
98 41 93 1
99 41 94 1
100 41 95 1
101 42 96 1
102 47 97 1
103 47 98 1
104 47 99 1
105 48 100 1
106 48 101 1
107 48 102 1
108 53 103 1
109 55 104 1
110 56 105 1
111 57 106 1
112 57 107 1
113 57 108 1