@COMMENT
LIGANDBOX_ID = D03637-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D03637
NAME = Cytarabine_hydrochloride_(USAN)
MOLECULAR_FORMULA = C9H13N3O5
MOLECULAR_WEIGHT = 243.219
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 5
NUM_OF_ACCEPTOR = 6
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 128.6100
HOMO = -9.1059
LUMO = 0.2007
mLOGD = -0.038
mLOGPA = -6.177
mLOGS = -0.825
@MOLECULE
D03637-05
30 31 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.5322 -0.1970 -0.8679 C.3 1 LGD 0.2572
2 N1 1.2612 0.1916 0.3610 N.am 1 LGD -0.3955
3 O1 -0.5389 0.7324 -1.1327 O.3 1 LGD -0.4161
4 C2 -0.1507 -1.5896 -0.7585 C.3 1 LGD 0.1100
5 C3 2.6468 0.0849 0.4038 C.2 1 LGD 0.8660
6 C4 0.5510 0.6429 1.4677 C.2 1 LGD 0.0756
7 C5 -1.5333 0.0343 -1.8947 C.3 1 LGD 0.1145
8 C6 -1.6222 -1.2993 -1.1359 C.3 1 LGD 0.1222
9 O2 0.4843 -2.4879 -1.6732 O.3 1 LGD -0.5711
10 N2 3.2727 0.4760 1.5841 N.2 1 LGD -0.7734
11 O3 3.2972 -0.3360 -0.5370 O.2 1 LGD -0.6150
12 C7 1.2079 1.0200 2.6187 C.2 1 LGD -0.4176
13 C8 -2.8439 0.8615 -1.9289 C.3 1 LGD 0.1412
14 O4 -2.2505 -2.3370 -1.8923 O.3 1 LGD -0.5649
15 C9 2.6436 0.9259 2.6543 C.2 1 LGD 0.7617
16 O5 -3.3306 1.1320 -0.6137 O.3 1 LGD -0.6056
17 N3 3.3515 1.2866 3.7646 N.pl3 1 LGD -0.9110
18 H1 1.2295 -0.1794 -1.7142 H 1 LGD 0.1139
19 H2 -0.0954 -1.9775 0.2667 H 1 LGD 0.0601
20 H3 -0.5238 0.6645 1.3361 H 1 LGD 0.1748
21 H4 -1.1705 -0.1380 -2.9168 H 1 LGD 0.0800
22 H5 -2.1775 -1.1425 -0.2025 H 1 LGD 0.0606
23 H6 1.3972 -2.6255 -1.3643 H 1 LGD 0.4196
24 H7 0.6577 1.3782 3.4812 H 1 LGD 0.1501
25 H8 -2.6515 1.8056 -2.4539 H 1 LGD 0.0365
26 H9 -3.6016 0.3120 -2.5011 H 1 LGD 0.0365
27 H10 -3.2108 -2.2577 -1.7573 H 1 LGD 0.4048
28 H11 -4.0579 1.7730 -0.6979 H 1 LGD 0.4109
29 H12 4.3469 1.4007 3.6485 H 1 LGD 0.4370
30 H13 2.8783 1.8461 4.4570 H 1 LGD 0.4370
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 am
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 2
11 6 12 2
12 7 13 1
13 8 14 1
14 10 15 2
15 13 16 1
16 15 17 1
17 7 8 1
18 12 15 1
19 1 18 1
20 4 19 1
21 6 20 1
22 7 21 1
23 8 22 1
24 9 23 1
25 12 24 1
26 13 25 1
27 13 26 1
28 14 27 1
29 16 28 1
30 17 29 1
31 17 30 1