@COMMENT
LIGANDBOX_ID = D03840-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D03840
NAME = Palinavir_(USAN/INN)
MOLECULAR_FORMULA = C41H52N6O5
MOLECULAR_WEIGHT = 708.904
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 5
TPSA = 145.7800
HOMO = -10.8357
LUMO = -3.8418
mLOGPA = -6.102
mLOGS = -3.936
mLOGD = 2.780
@MOLECULE
D03840-02
105 109 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -9.1301 -4.0919 -0.2296 C.ar 1 LGD -0.1140
2 C2 -8.0311 -3.7948 -1.0484 C.ar 1 LGD -0.1137
3 C3 -7.0525 -2.8892 -0.6093 C.ar 1 LGD -0.1720
4 C4 -7.1549 -2.2691 0.6491 C.ar 1 LGD 0.4089
5 C5 -8.2654 -2.5803 1.4700 C.ar 1 LGD -0.1343
6 C6 -9.2478 -3.4860 1.0302 C.ar 1 LGD -0.1123
7 N1 -6.2107 -1.3921 1.0456 N.ar 1 LGD -0.6724
8 C7 -6.3115 -0.7947 2.2551 C.ar 1 LGD 0.3810
9 C8 -7.3834 -1.0622 3.1289 C.ar 1 LGD -0.2029
10 C9 -8.3764 -1.9680 2.7299 C.ar 1 LGD -0.0786
11 C10 -5.2582 0.2242 2.6124 C.2 1 LGD 0.5888
12 N2 -4.3209 0.5616 1.6457 N.am 1 LGD -0.5764
13 C11 -3.4768 1.7680 1.7082 C.3 1 LGD 0.0723
14 C12 -2.0994 1.4871 1.0709 C.2 1 LGD 0.6622
15 N3 -1.1687 2.5153 1.0469 N.am 1 LGD -0.6035
16 C13 0.1002 2.4167 0.3106 C.3 1 LGD 0.0794
17 C14 1.2127 1.9033 1.2717 C.3 1 LGD 0.1111
18 C15 2.5893 1.7398 0.5815 C.3 1 LGD 0.1032
19 N4 2.5093 0.9485 -0.6704 N.4 1 LGD -0.6559
20 O1 -5.2283 0.7706 3.7035 O.2 1 LGD -0.5900
21 C16 -4.1993 2.9717 1.0120 C.3 1 LGD -0.0766
22 C17 -4.5092 2.6934 -0.4833 C.3 1 LGD -0.0911
23 C18 -5.4871 3.3982 1.7630 C.3 1 LGD -0.0911
24 O2 -1.8087 0.4048 0.5854 O.2 1 LGD -0.5983
25 C19 0.4084 3.7857 -0.3523 C.3 1 LGD -0.0442
26 C20 -0.7447 4.2518 -1.2380 C.ar 1 LGD -0.1035
27 O3 1.3610 2.7807 2.3856 O.3 1 LGD -0.5834
28 C21 3.8325 1.0108 -1.3320 C.3 1 LGD 0.1076
29 C22 3.7348 0.3882 -2.7383 C.3 1 LGD -0.1370
30 C23 3.2688 -1.0876 -2.6783 C.3 1 LGD 0.1404
31 C24 2.0009 -1.2451 -1.7972 C.3 1 LGD -0.0883
32 C25 2.0213 -0.4483 -0.4578 C.3 1 LGD 0.0415
33 O4 4.3097 -1.9095 -2.1169 O.3 1 LGD -0.4423
34 C26 5.3934 -2.2600 -2.9989 C.3 1 LGD 0.1825
35 C27 6.2864 -3.2723 -2.2968 C.ar 1 LGD -0.0753
36 C28 5.7466 -4.4392 -1.7271 C.ar 1 LGD -0.2318
37 C29 6.6037 -5.3413 -1.0744 C.ar 1 LGD 0.4045
38 N5 7.9328 -5.1442 -0.9694 N.ar 1 LGD -0.6464
39 C30 8.4536 -4.0297 -1.5207 C.ar 1 LGD 0.4045
40 C31 7.6737 -3.0706 -2.1905 C.ar 1 LGD -0.2318
41 C32 2.7126 -1.1902 0.7074 C.2 1 LGD 0.6486
42 C33 -1.5545 5.3333 -0.8420 C.ar 1 LGD -0.1259
43 C34 -2.6371 5.7377 -1.6396 C.ar 1 LGD -0.1151
44 C35 -2.9166 5.0646 -2.8390 C.ar 1 LGD -0.1123
45 C36 -2.1123 3.9867 -3.2405 C.ar 1 LGD -0.1151
46 C37 -1.0300 3.5809 -2.4426 C.ar 1 LGD -0.1259
47 N6 4.0813 -1.4313 0.6650 N.am 1 LGD -0.5845
48 O5 2.0563 -1.5342 1.6737 O.2 1 LGD -0.5355
49 C38 4.8974 -1.9747 1.7687 C.3 1 LGD 0.1437
50 C39 4.7562 -1.0980 3.0458 C.3 1 LGD -0.1052
51 C40 6.3680 -1.9186 1.2841 C.3 1 LGD -0.1052
52 C41 4.5051 -3.4524 2.0450 C.3 1 LGD -0.1052
53 H1 -9.8890 -4.7902 -0.5710 H 1 LGD 0.1428
54 H2 -7.9373 -4.2636 -2.0239 H 1 LGD 0.1415
55 H3 -6.2062 -2.6629 -1.2520 H 1 LGD 0.1443
56 H4 -10.1015 -3.7184 1.6608 H 1 LGD 0.1431
57 H5 -7.4550 -0.5644 4.0919 H 1 LGD 0.1666
58 H6 -9.2182 -2.1822 3.3828 H 1 LGD 0.1518
59 H7 -4.3103 0.0146 0.7961 H 1 LGD 0.3460
60 H8 -3.2831 2.0342 2.7551 H 1 LGD 0.0971
61 H9 -1.4290 3.4067 1.4425 H 1 LGD 0.3286
62 H10 -0.0155 1.6860 -0.4997 H 1 LGD 0.0518
63 H11 0.8996 0.9194 1.6420 H 1 LGD 0.0843
64 H12 2.9785 2.7303 0.3391 H 1 LGD 0.1137
65 H13 3.2875 1.2594 1.2694 H 1 LGD 0.1137
66 H14 -3.5219 3.8342 1.0497 H 1 LGD 0.0362
67 H15 -3.5912 2.4780 -1.0435 H 1 LGD 0.0438
68 H16 -5.1886 1.8392 -0.5983 H 1 LGD 0.0438
69 H17 -4.9860 3.5658 -0.9474 H 1 LGD 0.0438
70 H18 -5.2839 3.5548 2.8300 H 1 LGD 0.0438
71 H19 -5.8791 4.3381 1.3546 H 1 LGD 0.0438
72 H20 -6.2752 2.6403 1.6703 H 1 LGD 0.0438
73 H21 0.6194 4.5354 0.4209 H 1 LGD 0.0524
74 H22 1.3190 3.7038 -0.9588 H 1 LGD 0.0524
75 H23 0.4993 2.8171 2.8372 H 1 LGD 0.4429
76 H24 4.1384 2.0551 -1.4193 H 1 LGD 0.1070
77 H25 4.5734 0.4806 -0.7326 H 1 LGD 0.1070
78 H26 3.0180 0.9666 -3.3349 H 1 LGD 0.0836
79 H27 4.7012 0.4726 -3.2491 H 1 LGD 0.0836
80 H28 3.0350 -1.4401 -3.6916 H 1 LGD 0.0809
81 H29 1.1433 -0.8894 -2.3820 H 1 LGD 0.0970
82 H30 1.8108 -2.3078 -1.5981 H 1 LGD 0.0970
83 H31 0.9823 -0.3693 -0.1317 H 1 LGD 0.1396
84 H32 5.0014 -2.7061 -3.9217 H 1 LGD 0.0468
85 H33 5.9767 -1.3693 -3.2623 H 1 LGD 0.0468
86 H34 4.6809 -4.6420 -1.7822 H 1 LGD 0.1451
87 H35 6.2132 -6.2505 -0.6197 H 1 LGD 0.0352
88 H36 9.5302 -3.9004 -1.4201 H 1 LGD 0.0352
89 H37 8.1422 -2.1870 -2.6140 H 1 LGD 0.1451
90 H38 -1.3512 5.8568 0.0880 H 1 LGD 0.1211
91 H39 -3.2604 6.5706 -1.3267 H 1 LGD 0.1442
92 H40 -3.7557 5.3764 -3.4546 H 1 LGD 0.1471
93 H41 -2.3299 3.4636 -4.1674 H 1 LGD 0.1442
94 H42 -0.4174 2.7411 -2.7578 H 1 LGD 0.1211
95 H43 4.5550 -1.2245 -0.2025 H 1 LGD 0.3214
96 H44 4.9228 -0.0383 2.8135 H 1 LGD 0.0502
97 H45 3.7645 -1.1942 3.5033 H 1 LGD 0.0502
98 H46 5.4918 -1.3964 3.8037 H 1 LGD 0.0502
99 H47 6.5099 -2.5370 0.3912 H 1 LGD 0.0502
100 H48 6.6628 -0.8910 1.0346 H 1 LGD 0.0502
101 H49 7.0526 -2.2889 2.0581 H 1 LGD 0.0502
102 H50 4.5581 -4.0497 1.1257 H 1 LGD 0.0502
103 H51 5.1844 -3.9035 2.7795 H 1 LGD 0.0502
104 H52 3.4872 -3.5355 2.4436 H 1 LGD 0.0502
105 H53 1.8502 1.4102 -1.2825 H 1 LGD 0.4440
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 ar
8 7 8 ar
9 8 9 ar
10 9 10 ar
11 5 10 ar
12 8 11 1
13 11 12 am
14 12 13 1
15 13 14 1
16 14 15 am
17 15 16 1
18 16 17 1
19 17 18 1
20 18 19 1
21 11 20 2
22 13 21 1
23 21 22 1
24 21 23 1
25 14 24 2
26 16 25 1
27 25 26 1
28 17 27 1
29 19 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 31 32 1
34 19 32 1
35 30 33 1
36 33 34 1
37 34 35 1
38 35 36 ar
39 36 37 ar
40 37 38 ar
41 38 39 ar
42 39 40 ar
43 35 40 ar
44 32 41 1
45 26 42 ar
46 42 43 ar
47 43 44 ar
48 44 45 ar
49 45 46 ar
50 26 46 ar
51 41 47 am
52 41 48 2
53 47 49 1
54 49 50 1
55 49 51 1
56 49 52 1
57 1 53 1
58 2 54 1
59 3 55 1
60 6 56 1
61 9 57 1
62 10 58 1
63 12 59 1
64 13 60 1
65 15 61 1
66 16 62 1
67 17 63 1
68 18 64 1
69 18 65 1
70 21 66 1
71 22 67 1
72 22 68 1
73 22 69 1
74 23 70 1
75 23 71 1
76 23 72 1
77 25 73 1
78 25 74 1
79 27 75 1
80 28 76 1
81 28 77 1
82 29 78 1
83 29 79 1
84 30 80 1
85 31 81 1
86 31 82 1
87 32 83 1
88 34 84 1
89 34 85 1
90 36 86 1
91 37 87 1
92 39 88 1
93 40 89 1
94 42 90 1
95 43 91 1
96 44 92 1
97 45 93 1
98 46 94 1
99 47 95 1
100 50 96 1
101 50 97 1
102 50 98 1
103 51 99 1
104 51 100 1
105 51 101 1
106 52 102 1
107 52 103 1
108 52 104 1
109 19 105 1