@COMMENT
LIGANDBOX_ID = D03840-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D03840
NAME = Palinavir_(USAN/INN)
MOLECULAR_FORMULA = C41H52N6O5
MOLECULAR_WEIGHT = 708.904
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 5
TPSA = 145.7800
HOMO = -10.8357
LUMO = -3.8418
mLOGPA = -6.102
mLOGS = -3.936
mLOGD = 2.780
@MOLECULE
D03840-03
105 109 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 2.3544 3.0633 -5.9282 C.ar 1 LGD -0.1120
2 C2 2.0599 1.6929 -5.8937 C.ar 1 LGD -0.1045
3 C3 0.9123 1.2367 -5.2253 C.ar 1 LGD -0.1918
4 C4 0.0502 2.1365 -4.5718 C.ar 1 LGD 0.3966
5 C5 0.3516 3.5187 -4.6243 C.ar 1 LGD -0.1478
6 C6 1.4969 3.9777 -5.2996 C.ar 1 LGD -0.1097
7 N1 -1.0200 1.6749 -3.8905 N.ar 1 LGD -0.6856
8 C7 -1.8330 2.5426 -3.2477 C.ar 1 LGD 0.3689
9 C8 -1.6136 3.9326 -3.2859 C.ar 1 LGD -0.2190
10 C9 -0.5033 4.4288 -3.9819 C.ar 1 LGD -0.0757
11 C10 -2.9585 1.9771 -2.4172 C.2 1 LGD 0.5550
12 N2 -2.8715 0.6662 -1.9573 N.am 1 LGD -0.6071
13 C11 -3.8453 0.0721 -1.0201 C.3 1 LGD 0.0592
14 C12 -3.8316 0.8485 0.3115 C.2 1 LGD 0.6441
15 N3 -2.7775 0.6570 1.1963 N.am 1 LGD -0.6232
16 C13 -2.4858 1.5928 2.2877 C.3 1 LGD 0.0865
17 C14 -1.4732 2.6691 1.7807 C.3 1 LGD 0.1231
18 C15 0.0018 2.1964 1.6095 C.3 1 LGD 0.0935
19 N4 0.3422 1.7196 0.2419 N.4 1 LGD -0.6480
20 O1 -3.9281 2.6557 -2.1240 O.2 1 LGD -0.5337
21 C16 -3.5559 -1.4514 -0.8279 C.3 1 LGD -0.0741
22 C17 -4.5542 -2.0960 0.1702 C.3 1 LGD -0.0947
23 C18 -3.5943 -2.2158 -2.1768 C.3 1 LGD -0.0947
24 O2 -4.7238 1.6286 0.5976 O.2 1 LGD -0.5392
25 C19 -2.0376 0.8365 3.5758 C.3 1 LGD -0.0297
26 C20 -2.8722 -0.4040 3.9042 C.ar 1 LGD -0.0967
27 O3 -1.4769 3.7626 2.6944 O.3 1 LGD -0.5941
28 C21 1.7504 2.1139 0.0055 C.3 1 LGD 0.1001
29 C22 2.1266 1.8668 -1.4647 C.3 1 LGD -0.1046
30 C23 1.9470 0.3904 -1.8763 C.3 1 LGD 0.1382
31 C24 0.5968 -0.2061 -1.3871 C.3 1 LGD -0.1272
32 C25 0.1314 0.2549 0.0231 C.3 1 LGD 0.0411
33 O4 3.0338 -0.3830 -1.3350 O.3 1 LGD -0.4417
34 C26 3.3615 -1.5549 -2.1089 C.3 1 LGD 0.1823
35 C27 4.2053 -2.4973 -1.2702 C.ar 1 LGD -0.0764
36 C28 3.6296 -3.6205 -0.6532 C.ar 1 LGD -0.2295
37 C29 4.4475 -4.4785 0.1014 C.ar 1 LGD 0.4028
38 N5 5.7697 -4.2746 0.2650 N.ar 1 LGD -0.6446
39 C30 6.3232 -3.1983 -0.3292 C.ar 1 LGD 0.4028
40 C31 5.5840 -2.2867 -1.1030 C.ar 1 LGD -0.2295
41 C32 0.6812 -0.6371 1.1503 C.2 1 LGD 0.6439
42 C33 -2.2259 -1.5967 4.2845 C.ar 1 LGD -0.1171
43 C34 -2.9707 -2.7499 4.5757 C.ar 1 LGD -0.1270
44 C35 -4.3708 -2.7196 4.4967 C.ar 1 LGD -0.1203
45 C36 -5.0249 -1.5323 4.1330 C.ar 1 LGD -0.1270
46 C37 -4.2801 -0.3774 3.8418 C.ar 1 LGD -0.1171
47 N6 2.0512 -0.7093 1.3651 N.am 1 LGD -0.5844
48 O5 -0.0891 -1.2670 1.8502 O.2 1 LGD -0.5475
49 C38 2.7010 -1.1894 2.5989 C.3 1 LGD 0.1408
50 C39 2.2409 -0.3250 3.8048 C.3 1 LGD -0.1053
51 C40 4.2222 -0.9925 2.3789 C.3 1 LGD -0.1053
52 C41 2.4044 -2.6956 2.8428 C.3 1 LGD -0.1053
53 H1 3.2441 3.4163 -6.4422 H 1 LGD 0.1537
54 H2 2.7224 0.9834 -6.3818 H 1 LGD 0.1513
55 H3 0.6981 0.1719 -5.1997 H 1 LGD 0.1481
56 H4 1.7275 5.0392 -5.3304 H 1 LGD 0.1512
57 H5 -2.2774 4.6149 -2.7623 H 1 LGD 0.1733
58 H6 -0.3043 5.4968 -4.0082 H 1 LGD 0.1601
59 H7 -2.1017 0.1007 -2.2834 H 1 LGD 0.3183
60 H8 -4.8519 0.1824 -1.4449 H 1 LGD 0.1150
61 H9 -2.1625 -0.1302 1.0559 H 1 LGD 0.3190
62 H10 -3.4125 2.1188 2.5489 H 1 LGD 0.1019
63 H11 -1.8253 3.0386 0.8087 H 1 LGD 0.0436
64 H12 0.6245 3.0721 1.8033 H 1 LGD 0.1158
65 H13 0.2737 1.4476 2.3521 H 1 LGD 0.1158
66 H14 -2.5461 -1.5684 -0.4129 H 1 LGD 0.0276
67 H15 -4.4681 -1.6490 1.1677 H 1 LGD 0.0489
68 H16 -5.5890 -1.9686 -0.1728 H 1 LGD 0.0489
69 H17 -4.3603 -3.1708 0.2762 H 1 LGD 0.0489
70 H18 -2.8073 -1.8657 -2.8564 H 1 LGD 0.0489
71 H19 -3.4375 -3.2905 -2.0186 H 1 LGD 0.0489
72 H20 -4.5630 -2.0833 -2.6754 H 1 LGD 0.0489
73 H21 -0.9876 0.5436 3.4956 H 1 LGD 0.0536
74 H22 -2.0820 1.5318 4.4234 H 1 LGD 0.0536
75 H23 -2.3948 4.0796 2.7686 H 1 LGD 0.4466
76 H24 1.8642 3.1764 0.2293 H 1 LGD 0.1086
77 H25 2.4100 1.5499 0.6658 H 1 LGD 0.1086
78 H26 1.4975 2.5002 -2.1014 H 1 LGD 0.0917
79 H27 3.1644 2.1778 -1.6385 H 1 LGD 0.0917
80 H28 1.9877 0.3384 -2.9710 H 1 LGD 0.0835
81 H29 -0.1746 0.0867 -2.0999 H 1 LGD 0.0927
82 H30 0.6159 -1.3021 -1.4250 H 1 LGD 0.0927
83 H31 -0.9406 0.0817 0.0449 H 1 LGD 0.1241
84 H32 2.4513 -2.0781 -2.4273 H 1 LGD 0.0478
85 H33 3.9142 -1.2626 -3.0107 H 1 LGD 0.0478
86 H34 2.5681 -3.8276 -0.7545 H 1 LGD 0.1439
87 H35 4.0298 -5.3567 0.5917 H 1 LGD 0.0354
88 H36 7.3935 -3.0631 -0.1809 H 1 LGD 0.0354
89 H37 6.0750 -1.4343 -1.5635 H 1 LGD 0.1439
90 H38 -1.1424 -1.6345 4.3529 H 1 LGD 0.1338
91 H39 -2.4617 -3.6656 4.8630 H 1 LGD 0.1396
92 H40 -4.9471 -3.6125 4.7216 H 1 LGD 0.1399
93 H41 -6.1092 -1.5069 4.0759 H 1 LGD 0.1396
94 H42 -4.8008 0.5338 3.5627 H 1 LGD 0.1338
95 H43 2.6475 -0.3064 0.6558 H 1 LGD 0.3319
96 H44 2.3975 0.7429 3.6048 H 1 LGD 0.0505
97 H45 1.1782 -0.4755 4.0277 H 1 LGD 0.0505
98 H46 2.8069 -0.5863 4.7080 H 1 LGD 0.0505
99 H47 4.5746 -1.5848 1.5262 H 1 LGD 0.0505
100 H48 4.4588 0.0606 2.1785 H 1 LGD 0.0505
101 H49 4.7926 -1.3045 3.2631 H 1 LGD 0.0505
102 H50 2.5672 -3.2813 1.9310 H 1 LGD 0.0505
103 H51 3.0608 -3.0989 3.6243 H 1 LGD 0.0505
104 H52 1.3713 -2.8608 3.1706 H 1 LGD 0.0505
105 H53 -0.2270 2.2291 -0.4208 H 1 LGD 0.4494
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 ar
8 7 8 ar
9 8 9 ar
10 9 10 ar
11 5 10 ar
12 8 11 1
13 11 12 am
14 12 13 1
15 13 14 1
16 14 15 am
17 15 16 1
18 16 17 1
19 17 18 1
20 18 19 1
21 11 20 2
22 13 21 1
23 21 22 1
24 21 23 1
25 14 24 2
26 16 25 1
27 25 26 1
28 17 27 1
29 19 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 31 32 1
34 19 32 1
35 30 33 1
36 33 34 1
37 34 35 1
38 35 36 ar
39 36 37 ar
40 37 38 ar
41 38 39 ar
42 39 40 ar
43 35 40 ar
44 32 41 1
45 26 42 ar
46 42 43 ar
47 43 44 ar
48 44 45 ar
49 45 46 ar
50 26 46 ar
51 41 47 am
52 41 48 2
53 47 49 1
54 49 50 1
55 49 51 1
56 49 52 1
57 1 53 1
58 2 54 1
59 3 55 1
60 6 56 1
61 9 57 1
62 10 58 1
63 12 59 1
64 13 60 1
65 15 61 1
66 16 62 1
67 17 63 1
68 18 64 1
69 18 65 1
70 21 66 1
71 22 67 1
72 22 68 1
73 22 69 1
74 23 70 1
75 23 71 1
76 23 72 1
77 25 73 1
78 25 74 1
79 27 75 1
80 28 76 1
81 28 77 1
82 29 78 1
83 29 79 1
84 30 80 1
85 31 81 1
86 31 82 1
87 32 83 1
88 34 84 1
89 34 85 1
90 36 86 1
91 37 87 1
92 39 88 1
93 40 89 1
94 42 90 1
95 43 91 1
96 44 92 1
97 45 93 1
98 46 94 1
99 47 95 1
100 50 96 1
101 50 97 1
102 50 98 1
103 51 99 1
104 51 100 1
105 51 101 1
106 52 102 1
107 52 103 1
108 52 104 1
109 19 105 1