@COMMENT
LIGANDBOX_ID = D03840-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D03840
NAME = Palinavir_(USAN/INN)
MOLECULAR_FORMULA = C41H52N6O5
MOLECULAR_WEIGHT = 708.904
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 5
TPSA = 145.7800
HOMO = -10.8357
LUMO = -3.8418
mLOGPA = -6.102
mLOGS = -3.936
mLOGD = 2.780
@MOLECULE
D03840-04
105 109 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.8078 3.4725 7.7074 C.ar 1 LGD -0.1101
2 C2 0.4078 4.4155 6.7498 C.ar 1 LGD -0.1067
3 C3 -0.4191 4.0275 5.6831 C.ar 1 LGD -0.1738
4 C4 -0.8598 2.6972 5.5565 C.ar 1 LGD 0.4053
5 C5 -0.4502 1.7542 6.5302 C.ar 1 LGD -0.1351
6 C6 0.3796 2.1414 7.5982 C.ar 1 LGD -0.1133
7 N1 -1.6539 2.3437 4.5237 N.ar 1 LGD -0.6844
8 C7 -2.0810 1.0646 4.4115 C.ar 1 LGD 0.3623
9 C8 -1.7109 0.0732 5.3410 C.ar 1 LGD -0.2086
10 C9 -0.8834 0.4229 6.4168 C.ar 1 LGD -0.0750
11 C10 -2.9494 0.7227 3.2259 C.2 1 LGD 0.5728
12 N2 -3.3152 1.7406 2.3556 N.am 1 LGD -0.6000
13 C11 -3.8471 1.4949 1.0013 C.3 1 LGD 0.0678
14 C12 -2.6728 1.2691 0.0217 C.2 1 LGD 0.6580
15 N3 -1.3917 1.6395 0.4111 N.am 1 LGD -0.5995
16 C13 -0.1786 1.2998 -0.3493 C.3 1 LGD 0.0957
17 C14 0.8253 0.5947 0.6106 C.3 1 LGD 0.1096
18 C15 2.1681 0.2111 -0.0646 C.3 1 LGD 0.0986
19 N4 2.0302 -0.4219 -1.4023 N.4 1 LGD -0.6579
20 O1 -3.3209 -0.4181 3.0080 O.2 1 LGD -0.5806
21 C16 -4.7726 2.6878 0.6001 C.3 1 LGD -0.0628
22 C17 -5.3165 2.5503 -0.8467 C.3 1 LGD -0.0913
23 C18 -5.9643 2.8188 1.5881 C.3 1 LGD -0.0913
24 O2 -2.8359 0.7255 -1.0567 O.2 1 LGD -0.5957
25 C19 0.3688 2.5862 -1.0227 C.3 1 LGD -0.0412
26 C20 -0.6641 3.1838 -1.9718 C.ar 1 LGD -0.0935
27 O3 1.1141 1.4246 1.7362 O.3 1 LGD -0.5834
28 C21 3.3098 -0.1085 -2.0912 C.3 1 LGD 0.1099
29 C22 3.3308 -0.6413 -3.5418 C.3 1 LGD -0.1315
30 C23 3.0537 -2.1621 -3.5846 C.3 1 LGD 0.1402
31 C24 1.7698 -2.4754 -2.8011 C.3 1 LGD -0.0942
32 C25 1.8427 -1.9042 -1.3567 C.3 1 LGD 0.0428
33 O4 4.1207 -2.8804 -2.9328 O.3 1 LGD -0.4385
34 C26 5.3162 -3.0910 -3.7054 C.3 1 LGD 0.1843
35 C27 6.1845 -4.1183 -2.9895 C.ar 1 LGD -0.0707
36 C28 5.6408 -5.3335 -2.5341 C.ar 1 LGD -0.2317
37 C29 6.4761 -6.2559 -1.8814 C.ar 1 LGD 0.4065
38 N5 7.7891 -6.0354 -1.6721 N.ar 1 LGD -0.6477
39 C30 8.3137 -4.8743 -2.1123 C.ar 1 LGD 0.4065
40 C31 7.5546 -3.8915 -2.7721 C.ar 1 LGD -0.2317
41 C32 0.6226 -2.3724 -0.5513 C.2 1 LGD 0.6364
42 C33 -1.4710 4.2619 -1.5605 C.ar 1 LGD -0.1193
43 C34 -2.4640 4.7688 -2.4138 C.ar 1 LGD -0.1167
44 C35 -2.6559 4.2014 -3.6832 C.ar 1 LGD -0.1130
45 C36 -1.8530 3.1277 -4.0993 C.ar 1 LGD -0.1167
46 C37 -0.8606 2.6195 -3.2458 C.ar 1 LGD -0.1193
47 N6 -0.6373 -2.2825 -1.1363 N.am 1 LGD -0.5742
48 O5 0.7644 -2.8406 0.5642 O.2 1 LGD -0.5363
49 C38 -1.8457 -2.9895 -0.6684 C.3 1 LGD 0.1401
50 C39 -1.5863 -4.5198 -0.5869 C.3 1 LGD -0.1058
51 C40 -2.9412 -2.7298 -1.7355 C.3 1 LGD -0.1058
52 C41 -2.3008 -2.4254 0.7027 C.3 1 LGD -0.1058
53 H1 1.4476 3.7727 8.5325 H 1 LGD 0.1472
54 H2 0.7376 5.4473 6.8333 H 1 LGD 0.1474
55 H3 -0.7230 4.7667 4.9471 H 1 LGD 0.1477
56 H4 0.6917 1.4138 8.3425 H 1 LGD 0.1459
57 H5 -2.0561 -0.9510 5.2311 H 1 LGD 0.1687
58 H6 -0.5855 -0.3256 7.1461 H 1 LGD 0.1550
59 H7 -3.0819 2.6878 2.6187 H 1 LGD 0.3353
60 H8 -4.4445 0.5739 1.0004 H 1 LGD 0.1162
61 H9 -1.2871 2.1193 1.2925 H 1 LGD 0.3264
62 H10 -0.4265 0.5855 -1.1436 H 1 LGD 0.0590
63 H11 0.3452 -0.3207 0.9726 H 1 LGD 0.0781
64 H12 2.7377 1.1344 -0.1885 H 1 LGD 0.1138
65 H13 2.7413 -0.4474 0.5907 H 1 LGD 0.1138
66 H14 -4.1879 3.6159 0.6491 H 1 LGD 0.0468
67 H15 -4.5159 2.6768 -1.5856 H 1 LGD 0.0456
68 H16 -5.7778 1.5663 -1.0013 H 1 LGD 0.0456
69 H17 -6.0738 3.3165 -1.0553 H 1 LGD 0.0456
70 H18 -5.6196 3.0440 2.6050 H 1 LGD 0.0456
71 H19 -6.6392 3.6286 1.2837 H 1 LGD 0.0456
72 H20 -6.5455 1.8882 1.6239 H 1 LGD 0.0456
73 H21 0.6504 3.3190 -0.2554 H 1 LGD 0.0463
74 H22 1.2846 2.3559 -1.5810 H 1 LGD 0.0463
75 H23 0.4600 1.2231 2.4286 H 1 LGD 0.4397
76 H24 3.4543 0.9736 -2.1019 H 1 LGD 0.1071
77 H25 4.1299 -0.5619 -1.5306 H 1 LGD 0.1071
78 H26 2.5660 -0.1165 -4.1281 H 1 LGD 0.0840
79 H27 4.2966 -0.4129 -4.0087 H 1 LGD 0.0840
80 H28 2.9424 -2.5026 -4.6224 H 1 LGD 0.0834
81 H29 0.9118 -2.0487 -3.3361 H 1 LGD 0.0906
82 H30 1.6197 -3.5625 -2.7670 H 1 LGD 0.0906
83 H31 2.7144 -2.3354 -0.8606 H 1 LGD 0.1451
84 H32 5.0608 -3.4748 -4.7013 H 1 LGD 0.0454
85 H33 5.8639 -2.1479 -3.8235 H 1 LGD 0.0454
86 H34 4.5886 -5.5608 -2.6801 H 1 LGD 0.1424
87 H35 6.0813 -7.2027 -1.5152 H 1 LGD 0.0335
88 H36 9.3775 -4.7276 -1.9309 H 1 LGD 0.0335
89 H37 8.0268 -2.9731 -3.1084 H 1 LGD 0.1424
90 H38 -1.3399 4.6964 -0.5735 H 1 LGD 0.1166
91 H39 -3.0891 5.5955 -2.0884 H 1 LGD 0.1401
92 H40 -3.4275 4.5903 -4.3415 H 1 LGD 0.1439
93 H41 -2.0043 2.6851 -5.0796 H 1 LGD 0.1401
94 H42 -0.2532 1.7790 -3.5692 H 1 LGD 0.1166
95 H43 -0.7060 -1.7952 -2.0170 H 1 LGD 0.3035
96 H44 -1.1853 -4.8998 -1.5353 H 1 LGD 0.0528
97 H45 -0.8755 -4.7736 0.2084 H 1 LGD 0.0528
98 H46 -2.5188 -5.0587 -0.3755 H 1 LGD 0.0528
99 H47 -3.1304 -1.6588 -1.8633 H 1 LGD 0.0528
100 H48 -2.6421 -3.1329 -2.7117 H 1 LGD 0.0528
101 H49 -3.8890 -3.2045 -1.4511 H 1 LGD 0.0528
102 H50 -2.3323 -1.3318 0.6789 H 1 LGD 0.0528
103 H51 -3.3034 -2.7874 0.9630 H 1 LGD 0.0528
104 H52 -1.6231 -2.7226 1.5118 H 1 LGD 0.0528
105 H53 1.2688 0.0115 -1.9065 H 1 LGD 0.4486
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 ar
8 7 8 ar
9 8 9 ar
10 9 10 ar
11 5 10 ar
12 8 11 1
13 11 12 am
14 12 13 1
15 13 14 1
16 14 15 am
17 15 16 1
18 16 17 1
19 17 18 1
20 18 19 1
21 11 20 2
22 13 21 1
23 21 22 1
24 21 23 1
25 14 24 2
26 16 25 1
27 25 26 1
28 17 27 1
29 19 28 1
30 28 29 1
31 29 30 1
32 30 31 1
33 31 32 1
34 19 32 1
35 30 33 1
36 33 34 1
37 34 35 1
38 35 36 ar
39 36 37 ar
40 37 38 ar
41 38 39 ar
42 39 40 ar
43 35 40 ar
44 32 41 1
45 26 42 ar
46 42 43 ar
47 43 44 ar
48 44 45 ar
49 45 46 ar
50 26 46 ar
51 41 47 am
52 41 48 2
53 47 49 1
54 49 50 1
55 49 51 1
56 49 52 1
57 1 53 1
58 2 54 1
59 3 55 1
60 6 56 1
61 9 57 1
62 10 58 1
63 12 59 1
64 13 60 1
65 15 61 1
66 16 62 1
67 17 63 1
68 18 64 1
69 18 65 1
70 21 66 1
71 22 67 1
72 22 68 1
73 22 69 1
74 23 70 1
75 23 71 1
76 23 72 1
77 25 73 1
78 25 74 1
79 27 75 1
80 28 76 1
81 28 77 1
82 29 78 1
83 29 79 1
84 30 80 1
85 31 81 1
86 31 82 1
87 32 83 1
88 34 84 1
89 34 85 1
90 36 86 1
91 37 87 1
92 39 88 1
93 40 89 1
94 42 90 1
95 43 91 1
96 44 92 1
97 45 93 1
98 46 94 1
99 47 95 1
100 50 96 1
101 50 97 1
102 50 98 1
103 51 99 1
104 51 100 1
105 51 101 1
106 52 102 1
107 52 103 1
108 52 104 1
109 19 105 1