@COMMENT
LIGANDBOX_ID = D05385-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D05385
NAME = Pegamotecan_(USAN)_Prothecan_(TN)
MOLECULAR_FORMULA = C52H48N6O14
MOLECULAR_WEIGHT = 980.984
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 2
NUM_OF_ACCEPTOR = 16
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 248.2600
HOMO = -8.5830
LUMO = -1.2356
mLOGS = -3.895
mLOGD = 1.930
mLOGPA = -6.427
@MOLECULE
D05385-03
120 129 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -5.3120 -0.2880 -2.2491 C.3 1 LGD 0.1252
2 C2 -6.9090 -1.5751 -0.3312 C.3 1 LGD 0.2062
3 O1 -7.4898 -1.2854 -1.6179 O.3 1 LGD -0.4201
4 C3 -6.8038 -0.6013 -2.5934 C.2 1 LGD 0.7648
5 C4 -4.7142 -1.4475 -1.4454 C.2 1 LGD -0.0250
6 C5 -5.5193 -2.1196 -0.5337 C.2 1 LGD -0.2427
7 O2 -7.3306 -0.3053 -3.6526 O.2 1 LGD -0.5416
8 C6 -3.3539 -1.9142 -1.6528 C.2 1 LGD -0.1405
9 C7 -3.0138 -3.0461 -0.9511 C.2 1 LGD -0.0322
10 N1 -3.8261 -3.7314 -0.0794 N.am 1 LGD -0.3422
11 C8 -5.1100 -3.3310 0.2282 C.2 1 LGD 0.7312
12 C9 -1.7644 -3.7514 -1.1255 C.ar 1 LGD 0.4514
13 C10 -1.8202 -4.8987 -0.3562 C.ar 1 LGD -0.2369
14 C11 -3.1426 -4.9558 0.3994 C.3 1 LGD 0.1494
15 N2 -0.7364 -3.3939 -1.9129 N.ar 1 LGD -0.6272
16 C12 0.3220 -4.2419 -1.9462 C.ar 1 LGD 0.4103
17 C13 0.3357 -5.4673 -1.2103 C.ar 1 LGD -0.1346
18 C14 -0.7605 -5.8058 -0.3884 C.ar 1 LGD -0.0487
19 C15 1.4513 -3.9176 -2.7205 C.ar 1 LGD -0.1686
20 C16 2.5620 -4.7751 -2.7765 C.ar 1 LGD -0.1125
21 C17 2.5564 -5.9830 -2.0646 C.ar 1 LGD -0.1188
22 C18 1.4442 -6.3308 -1.2845 C.ar 1 LGD -0.1020
23 O3 -5.8198 -3.9257 1.0211 O.2 1 LGD -0.6212
24 C19 -4.5152 0.0913 -3.5545 C.3 1 LGD -0.0841
25 C20 -4.4340 -1.0283 -4.6292 C.3 1 LGD -0.0943
26 C21 0.1908 -2.3854 1.3209 C.3 1 LGD 0.2062
27 O4 -0.5503 -2.0403 2.5020 O.3 1 LGD -0.4201
28 C22 -0.3705 -0.8485 3.1596 C.2 1 LGD 0.7648
29 C23 0.7278 0.0878 2.5441 C.3 1 LGD 0.1252
30 C24 1.9059 -0.7852 2.0997 C.2 1 LGD -0.0250
31 C25 1.6389 -2.0182 1.5153 C.2 1 LGD -0.2427
32 O5 -0.9726 -0.6088 4.1916 O.2 1 LGD -0.5416
33 C26 3.2895 -0.3485 2.2026 C.2 1 LGD -0.1405
34 C27 4.2157 -1.2201 1.6785 C.2 1 LGD -0.0322
35 N3 3.9462 -2.4504 1.1311 N.am 1 LGD -0.3422
36 C28 2.6737 -2.9604 1.0170 C.2 1 LGD 0.7312
37 C29 5.6251 -0.9217 1.5506 C.ar 1 LGD 0.4514
38 C30 6.2249 -1.9953 0.9177 C.ar 1 LGD -0.2369
39 C31 5.1893 -3.0718 0.6213 C.3 1 LGD 0.1494
40 N4 6.2493 0.2106 1.9144 N.ar 1 LGD -0.6272
41 C32 7.5752 0.2856 1.6362 C.ar 1 LGD 0.4103
42 C33 8.2759 -0.7770 0.9858 C.ar 1 LGD -0.1346
43 C34 7.5854 -1.9500 0.6143 C.ar 1 LGD -0.0487
44 C35 8.2967 1.4423 1.9844 C.ar 1 LGD -0.1686
45 C36 9.6682 1.5530 1.7033 C.ar 1 LGD -0.1125
46 C37 10.3438 0.5035 1.0649 C.ar 1 LGD -0.1188
47 C38 9.6491 -0.6599 0.7057 C.ar 1 LGD -0.1020
48 O6 2.4435 -4.0575 0.5448 O.2 1 LGD -0.6212
49 O7 0.1646 0.7033 1.3456 O.3 1 LGD -0.4363
50 C39 1.1151 1.2284 3.5662 C.3 1 LGD -0.0841
51 C40 -0.0365 2.1967 3.9504 C.3 1 LGD -0.0943
52 C41 0.8810 1.5355 0.5167 C.2 1 LGD 0.6436
53 C42 0.0224 2.0578 -0.6425 C.3 1 LGD 0.0806
54 O8 2.0471 1.8589 0.6746 O.2 1 LGD -0.5221
55 N5 0.5763 3.3345 -1.1251 N.am 1 LGD -0.5803
56 C43 -0.2250 4.4053 -1.4880 C.2 1 LGD 0.6620
57 C44 0.4063 5.7976 -1.5518 C.3 1 LGD 0.0649
58 O9 -1.4035 4.2277 -1.7444 O.2 1 LGD -0.6019
59 O10 1.0954 6.1413 -0.3261 O.3 1 LGD -0.4255
60 C45 0.2862 6.3999 0.8450 C.3 1 LGD 0.1019
61 C46 0.2337 5.1353 1.7432 C.3 1 LGD 0.1019
62 O11 -0.9249 4.3401 1.4292 O.3 1 LGD -0.4255
63 C47 -2.1676 4.7756 2.0136 C.3 1 LGD 0.0649
64 C48 -3.2979 3.8350 1.5904 C.2 1 LGD 0.6620
65 N6 -3.4762 3.6054 0.2362 N.am 1 LGD -0.5803
66 C49 -4.6420 2.9073 -0.3283 C.3 1 LGD 0.0806
67 C50 -4.2699 1.5107 -0.8627 C.2 1 LGD 0.6436
68 O12 -5.3643 0.9026 -1.4177 O.3 1 LGD -0.4363
69 C51 -0.0555 1.0321 -1.7948 C.3 1 LGD -0.0983
70 O13 -4.0314 3.3019 2.4050 O.2 1 LGD -0.6019
71 C52 -5.2082 3.7998 -1.4596 C.3 1 LGD -0.0983
72 O14 -3.1515 1.0278 -0.8116 O.2 1 LGD -0.5221
73 H1 -6.8557 -0.6578 0.2690 H 1 LGD 0.0869
74 H2 -7.5432 -2.2936 0.2026 H 1 LGD 0.0869
75 H3 -2.6624 -1.4430 -2.3404 H 1 LGD 0.1850
76 H4 -3.7219 -5.8472 0.1275 H 1 LGD 0.0847
77 H5 -2.9870 -4.9056 1.4845 H 1 LGD 0.0847
78 H6 -0.7816 -6.7232 0.1934 H 1 LGD 0.1493
79 H7 1.4689 -2.9858 -3.2786 H 1 LGD 0.1491
80 H8 3.4283 -4.5016 -3.3721 H 1 LGD 0.1373
81 H9 3.4178 -6.6434 -2.1075 H 1 LGD 0.1359
82 H10 1.4529 -7.2607 -0.7227 H 1 LGD 0.1373
83 H11 -3.4940 0.4005 -3.3030 H 1 LGD 0.0612
84 H12 -4.9791 0.9751 -4.0115 H 1 LGD 0.0612
85 H13 -5.4179 -1.2549 -5.0553 H 1 LGD 0.0448
86 H14 -3.7853 -0.7087 -5.4543 H 1 LGD 0.0448
87 H15 -4.0214 -1.9594 -4.2250 H 1 LGD 0.0448
88 H16 0.0811 -3.4586 1.1263 H 1 LGD 0.0869
89 H17 -0.2092 -1.8377 0.4584 H 1 LGD 0.0869
90 H18 3.5843 0.6117 2.6060 H 1 LGD 0.1850
91 H19 5.1050 -3.2628 -0.4562 H 1 LGD 0.0847
92 H20 5.4041 -3.9989 1.1675 H 1 LGD 0.0847
93 H21 8.0805 -2.7740 0.1077 H 1 LGD 0.1493
94 H22 7.7855 2.2648 2.4767 H 1 LGD 0.1491
95 H23 10.2070 2.4548 1.9800 H 1 LGD 0.1373
96 H24 11.4045 0.5919 0.8475 H 1 LGD 0.1359
97 H25 10.1778 -1.4689 0.2089 H 1 LGD 0.1373
98 H26 1.5200 0.7757 4.4805 H 1 LGD 0.0612
99 H27 1.9194 1.8506 3.1630 H 1 LGD 0.0612
100 H28 -0.7201 2.3649 3.1114 H 1 LGD 0.0448
101 H29 -0.6226 1.8111 4.7928 H 1 LGD 0.0448
102 H30 0.3703 3.1681 4.2579 H 1 LGD 0.0448
103 H31 -0.9849 2.2217 -0.2420 H 1 LGD 0.1148
104 H32 1.5612 3.5085 -0.9835 H 1 LGD 0.3418
105 H33 1.1246 5.7970 -2.3806 H 1 LGD 0.0657
106 H34 -0.3745 6.5370 -1.7715 H 1 LGD 0.0657
107 H35 0.7586 7.2041 1.4226 H 1 LGD 0.0626
108 H36 -0.7195 6.7379 0.5653 H 1 LGD 0.0626
109 H37 1.1436 4.5414 1.5895 H 1 LGD 0.0626
110 H38 0.2052 5.4325 2.7994 H 1 LGD 0.0626
111 H39 -2.0974 4.7719 3.1089 H 1 LGD 0.0657
112 H40 -2.4195 5.7870 1.6721 H 1 LGD 0.0657
113 H41 -2.7919 3.9884 -0.4031 H 1 LGD 0.3418
114 H42 -5.4222 2.7752 0.4319 H 1 LGD 0.1148
115 H43 -0.4716 0.0806 -1.4399 H 1 LGD 0.0530
116 H44 -0.7000 1.4044 -2.6011 H 1 LGD 0.0530
117 H45 0.9405 0.8362 -2.2119 H 1 LGD 0.0530
118 H46 -6.1248 3.3706 -1.8832 H 1 LGD 0.0530
119 H47 -5.4513 4.8005 -1.0806 H 1 LGD 0.0530
120 H48 -4.4766 3.9102 -2.2709 H 1 LGD 0.0530
@BOND
1 2 3 1
2 3 4 1
3 5 6 2
4 2 6 1
5 4 7 2
6 5 8 1
7 8 9 2
8 9 10 1
9 10 11 am
10 6 11 1
11 9 12 1
12 12 13 ar
13 13 14 1
14 10 14 1
15 12 15 ar
16 15 16 ar
17 16 17 ar
18 17 18 ar
19 13 18 ar
20 16 19 ar
21 19 20 ar
22 20 21 ar
23 21 22 ar
24 17 22 ar
25 11 23 2
26 1 4 1
27 1 5 1
28 24 25 1
29 1 24 1
30 26 27 1
31 27 28 1
32 28 29 1
33 29 30 1
34 30 31 2
35 26 31 1
36 28 32 2
37 30 33 1
38 33 34 2
39 34 35 1
40 35 36 am
41 31 36 1
42 34 37 1
43 37 38 ar
44 38 39 1
45 35 39 1
46 37 40 ar
47 40 41 ar
48 41 42 ar
49 42 43 ar
50 38 43 ar
51 41 44 ar
52 44 45 ar
53 45 46 ar
54 46 47 ar
55 42 47 ar
56 36 48 2
57 29 49 1
58 29 50 1
59 50 51 1
60 49 52 1
61 52 53 1
62 52 54 2
63 53 55 1
64 55 56 am
65 56 57 1
66 56 58 2
67 57 59 1
68 59 60 1
69 60 61 1
70 61 62 1
71 62 63 1
72 63 64 1
73 64 65 am
74 65 66 1
75 66 67 1
76 67 68 1
77 53 69 1
78 64 70 2
79 66 71 1
80 67 72 2
81 1 68 1
82 2 73 1
83 2 74 1
84 8 75 1
85 14 76 1
86 14 77 1
87 18 78 1
88 19 79 1
89 20 80 1
90 21 81 1
91 22 82 1
92 24 83 1
93 24 84 1
94 25 85 1
95 25 86 1
96 25 87 1
97 26 88 1
98 26 89 1
99 33 90 1
100 39 91 1
101 39 92 1
102 43 93 1
103 44 94 1
104 45 95 1
105 46 96 1
106 47 97 1
107 50 98 1
108 50 99 1
109 51 100 1
110 51 101 1
111 51 102 1
112 53 103 1
113 55 104 1
114 57 105 1
115 57 106 1
116 60 107 1
117 60 108 1
118 61 109 1
119 61 110 1
120 63 111 1
121 63 112 1
122 65 113 1
123 66 114 1
124 69 115 1
125 69 116 1
126 69 117 1
127 71 118 1
128 71 119 1
129 71 120 1