@COMMENT
LIGANDBOX_ID = D05494-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D05494
NAME = Pirbenicillin_sodium_(USAN)
MOLECULAR_FORMULA = C24H25N6O5S
MOLECULAR_WEIGHT = 509.566
MOLECULAR_CHARGE = -1
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 167.4100
HOMO = -6.2707
LUMO = -4.0232
mLOGD = -0.079
mLOGPA = -6.325
mLOGS = -1.930
@MOLECULE
D05494-02
62 65 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.6418 1.3624 0.0194 C.3 1 LGD -0.0041
2 C2 1.8780 2.2889 0.1896 C.2 1 LGD 0.6852
3 N1 2.1444 2.2881 -1.1649 N.am 1 LGD -0.4219
4 C3 1.0258 1.3920 -1.5006 C.3 1 LGD 0.1442
5 C4 3.4516 2.0743 -1.8229 C.3 1 LGD -0.0532
6 C5 3.2065 1.0682 -2.9853 C.3 1 LGD 0.0967
7 S1 1.8740 -0.0354 -2.3414 S.3 1 LGD -0.3832
8 C6 2.6683 1.8102 -4.2392 C.3 1 LGD -0.0771
9 C7 4.4554 0.2321 -3.3791 C.3 1 LGD -0.0771
10 C8 4.5329 1.6142 -0.8114 C.2 1 LGD 0.9348
11 O1 4.3239 0.6026 -0.1604 O.co2 1 LGD -0.8045
12 O2 5.5303 2.3092 -0.7269 O.co2 1 LGD -0.8045
13 N2 0.8552 0.0417 0.6276 N.am 1 LGD -0.5391
14 C9 -0.1142 -0.9473 0.6619 C.2 1 LGD 0.6486
15 O3 2.5254 2.8322 1.0675 O.2 1 LGD -0.5296
16 C10 -1.5353 -0.7116 0.1017 C.3 1 LGD 0.1067
17 N3 -2.5098 -1.4728 0.8940 N.am 1 LGD -0.5747
18 O4 0.2069 -2.0081 1.1702 O.2 1 LGD -0.6450
19 C11 -3.6805 -0.8989 1.3612 C.2 1 LGD 0.6078
20 C12 -4.3079 -1.4872 2.6236 C.3 1 LGD -0.0742
21 C13 -1.6509 -1.0989 -1.3687 C.ar 1 LGD -0.1091
22 C14 -1.3240 -2.3989 -1.8017 C.ar 1 LGD -0.0961
23 C15 -1.4459 -2.7455 -3.1570 C.ar 1 LGD -0.1248
24 C16 -1.8951 -1.7963 -4.0881 C.ar 1 LGD -0.1046
25 C17 -2.2224 -0.4996 -3.6630 C.ar 1 LGD -0.1248
26 C18 -2.1018 -0.1525 -2.3080 C.ar 1 LGD -0.0961
27 N4 -3.6089 -0.9397 3.8038 N.pl3 1 LGD -0.3562
28 C19 -2.2855 -1.2584 4.0290 C.2 1 LGD 0.5050
29 N5 -1.9720 -2.5246 4.2953 N.pl3 1 LGD -0.4084
30 O5 -4.1505 0.0800 0.8075 O.2 1 LGD -0.5388
31 C20 -1.2207 -0.2111 3.9211 C.ar 1 LGD -0.2267
32 C21 -1.5282 1.1201 3.5623 C.ar 1 LGD -0.1933
33 C22 -0.4932 2.0651 3.4507 C.ar 1 LGD 0.4253
34 N6 0.8003 1.7670 3.6699 N.ar 1 LGD -0.5536
35 C23 1.1077 0.5001 4.0036 C.ar 1 LGD 0.4253
36 C24 0.1420 -0.5124 4.1409 C.ar 1 LGD -0.1933
37 H1 -0.3049 1.8355 0.2964 H 1 LGD 0.0643
38 H2 0.2938 1.8313 -2.1832 H 1 LGD 0.0828
39 H3 3.7908 3.0311 -2.2402 H 1 LGD 0.0803
40 H4 2.3691 1.0949 -5.0158 H 1 LGD 0.0421
41 H5 1.7946 2.4291 -4.0000 H 1 LGD 0.0421
42 H6 3.4382 2.4677 -4.6626 H 1 LGD 0.0421
43 H7 4.7716 -0.4337 -2.5669 H 1 LGD 0.0421
44 H8 4.2414 -0.3983 -4.2513 H 1 LGD 0.0421
45 H9 5.2983 0.8875 -3.6339 H 1 LGD 0.0421
46 H10 1.7760 -0.1880 0.9749 H 1 LGD 0.3799
47 H11 -1.7614 0.3543 0.2078 H 1 LGD 0.0829
48 H12 -2.2038 -2.3435 1.3036 H 1 LGD 0.3153
49 H13 -5.3700 -1.2125 2.6516 H 1 LGD 0.1042
50 H14 -4.2245 -2.5808 2.5914 H 1 LGD 0.1042
51 H15 -0.9791 -3.1428 -1.0891 H 1 LGD 0.1340
52 H16 -1.1945 -3.7501 -3.4847 H 1 LGD 0.1372
53 H17 -1.9918 -2.0656 -5.1360 H 1 LGD 0.1358
54 H18 -2.5730 0.2352 -4.3822 H 1 LGD 0.1372
55 H19 -2.3633 0.8523 -1.9884 H 1 LGD 0.1340
56 H20 -3.7957 0.0527 3.8275 H 1 LGD 0.2943
57 H21 -1.0075 -2.7867 4.4340 H 1 LGD 0.3355
58 H22 -2.5484 1.4325 3.3617 H 1 LGD 0.1468
59 H23 -0.7082 3.0957 3.1721 H 1 LGD 0.0654
60 H24 2.1638 0.2873 4.1638 H 1 LGD 0.0654
61 H25 0.4664 -1.5137 4.4065 H 1 LGD 0.1468
62 H26 -2.7005 -3.2203 4.3581 H 1 LGD 0.3355
@BOND
1 1 2 1
2 2 3 am
3 3 4 1
4 1 4 1
5 3 5 1
6 5 6 1
7 6 7 1
8 4 7 1
9 6 8 1
10 6 9 1
11 5 10 1
12 10 11 1
13 10 12 2
14 1 13 1
15 13 14 am
16 2 15 2
17 14 16 1
18 16 17 1
19 14 18 2
20 17 19 am
21 19 20 1
22 16 21 1
23 21 22 ar
24 22 23 ar
25 23 24 ar
26 24 25 ar
27 25 26 ar
28 21 26 ar
29 20 27 1
30 27 28 1
31 28 29 2
32 19 30 2
33 28 31 1
34 31 32 ar
35 32 33 ar
36 33 34 ar
37 34 35 ar
38 35 36 ar
39 31 36 ar
40 1 37 1
41 4 38 1
42 5 39 1
43 8 40 1
44 8 41 1
45 8 42 1
46 9 43 1
47 9 44 1
48 9 45 1
49 13 46 1
50 16 47 1
51 17 48 1
52 20 49 1
53 20 50 1
54 22 51 1
55 23 52 1
56 24 53 1
57 25 54 1
58 26 55 1
59 27 56 1
60 29 57 1
61 32 58 1
62 33 59 1
63 35 60 1
64 36 61 1
65 29 62 1