@COMMENT
LIGANDBOX_ID = D05494-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D05494
NAME = Pirbenicillin_sodium_(USAN)
MOLECULAR_FORMULA = C24H25N6O5S
MOLECULAR_WEIGHT = 509.566
MOLECULAR_CHARGE = -1
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 167.4100
HOMO = -6.2707
LUMO = -4.0232
mLOGD = -0.079
mLOGPA = -6.325
mLOGS = -1.930
@MOLECULE
D05494-03
62 65 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.2189 0.9225 0.4968 C.3 1 LGD 0.0002
2 C2 0.8327 1.9804 0.9390 C.2 1 LGD 0.6896
3 N1 -0.1399 2.8412 1.4088 N.am 1 LGD -0.4192
4 C3 -1.2547 1.9405 1.0759 C.3 1 LGD 0.1498
5 C4 -0.1670 3.5525 2.7060 C.3 1 LGD -0.0576
6 C5 -1.5964 3.3537 3.2919 C.3 1 LGD 0.1070
7 S1 -2.0687 1.6617 2.7215 S.3 1 LGD -0.4072
8 C6 -2.5849 4.3801 2.6717 C.3 1 LGD -0.0781
9 C7 -1.6722 3.4447 4.8413 C.3 1 LGD -0.0781
10 C8 0.9698 3.0716 3.6437 C.2 1 LGD 0.9324
11 O1 1.0098 1.8895 3.9454 O.co2 1 LGD -0.7991
12 O2 1.7636 3.9178 4.0162 O.co2 1 LGD -0.7991
13 N2 -0.3239 0.8244 -0.9657 N.am 1 LGD -0.5665
14 C9 0.3675 -0.1015 -1.7299 C.2 1 LGD 0.6519
15 O3 2.0403 2.1339 0.9926 O.2 1 LGD -0.5230
16 C10 1.3092 -1.1505 -1.0965 C.3 1 LGD 0.1171
17 N3 1.2598 -2.3903 -1.8823 N.am 1 LGD -0.5780
18 O4 0.1802 -0.0531 -2.9337 O.2 1 LGD -0.6581
19 C11 1.1340 -3.6326 -1.2832 C.2 1 LGD 0.6048
20 C12 0.4968 -4.7559 -2.0991 C.3 1 LGD -0.0758
21 C13 2.7482 -0.6550 -1.0058 C.ar 1 LGD -0.1236
22 C14 3.4366 -0.2167 -2.1542 C.ar 1 LGD -0.0881
23 C15 4.7612 0.2389 -2.0550 C.ar 1 LGD -0.1221
24 C16 5.4067 0.2587 -0.8089 C.ar 1 LGD -0.1037
25 C17 4.7278 -0.1810 0.3379 C.ar 1 LGD -0.1221
26 C18 3.4046 -0.6392 0.2392 C.ar 1 LGD -0.0881
27 N4 -0.9720 -4.6078 -2.0493 N.pl3 1 LGD -0.3526
28 C19 -1.5740 -3.5193 -2.6463 C.2 1 LGD 0.5047
29 N5 -1.4893 -3.3922 -3.9690 N.pl3 1 LGD -0.4098
30 O5 1.4706 -3.7940 -0.1231 O.2 1 LGD -0.5233
31 C20 -2.2534 -2.4728 -1.8178 C.ar 1 LGD -0.2210
32 C21 -2.2798 -2.5474 -0.4072 C.ar 1 LGD -0.1899
33 C22 -2.9045 -1.5257 0.3304 C.ar 1 LGD 0.4230
34 N6 -3.4923 -0.4592 -0.2434 N.ar 1 LGD -0.5771
35 C23 -3.4708 -0.3757 -1.5864 C.ar 1 LGD 0.4230
36 C24 -2.8696 -1.3462 -2.4065 C.ar 1 LGD -0.1899
37 H1 -0.1862 -0.0398 1.0160 H 1 LGD 0.1037
38 H2 -1.9805 2.3650 0.3772 H 1 LGD 0.0762
39 H3 0.0010 4.6211 2.5208 H 1 LGD 0.0808
40 H4 -3.6160 4.1608 2.9772 H 1 LGD 0.0425
41 H5 -2.5513 4.3663 1.5753 H 1 LGD 0.0425
42 H6 -2.3445 5.3992 3.0003 H 1 LGD 0.0425
43 H7 -1.1226 2.6283 5.3250 H 1 LGD 0.0425
44 H8 -2.7132 3.3827 5.1832 H 1 LGD 0.0425
45 H9 -1.2567 4.3967 5.1961 H 1 LGD 0.0425
46 H10 -0.9160 1.4803 -1.4533 H 1 LGD 0.3345
47 H11 0.9411 -1.3655 -0.0881 H 1 LGD 0.0920
48 H12 1.0736 -2.3120 -2.8716 H 1 LGD 0.3107
49 H13 0.7950 -5.7196 -1.6673 H 1 LGD 0.1053
50 H14 0.8611 -4.7019 -3.1327 H 1 LGD 0.1053
51 H15 2.9474 -0.2289 -3.1241 H 1 LGD 0.1367
52 H16 5.2866 0.5772 -2.9435 H 1 LGD 0.1406
53 H17 6.4304 0.6137 -0.7318 H 1 LGD 0.1357
54 H18 5.2251 -0.1651 1.3034 H 1 LGD 0.1406
55 H19 2.8876 -0.9754 1.1338 H 1 LGD 0.1367
56 H20 -1.2551 -4.7528 -1.0906 H 1 LGD 0.2962
57 H21 -1.8935 -2.5881 -4.4253 H 1 LGD 0.3349
58 H22 -1.8192 -3.3737 0.1255 H 1 LGD 0.1498
59 H23 -2.9316 -1.5618 1.4187 H 1 LGD 0.0641
60 H24 -3.9470 0.5018 -2.0215 H 1 LGD 0.0641
61 H25 -2.8844 -1.2053 -3.4827 H 1 LGD 0.1498
62 H26 -1.0186 -4.1002 -4.5130 H 1 LGD 0.3349
@BOND
1 1 2 1
2 2 3 am
3 3 4 1
4 1 4 1
5 3 5 1
6 5 6 1
7 6 7 1
8 4 7 1
9 6 8 1
10 6 9 1
11 5 10 1
12 10 11 1
13 10 12 2
14 1 13 1
15 13 14 am
16 2 15 2
17 14 16 1
18 16 17 1
19 14 18 2
20 17 19 am
21 19 20 1
22 16 21 1
23 21 22 ar
24 22 23 ar
25 23 24 ar
26 24 25 ar
27 25 26 ar
28 21 26 ar
29 20 27 1
30 27 28 1
31 28 29 2
32 19 30 2
33 28 31 1
34 31 32 ar
35 32 33 ar
36 33 34 ar
37 34 35 ar
38 35 36 ar
39 31 36 ar
40 1 37 1
41 4 38 1
42 5 39 1
43 8 40 1
44 8 41 1
45 8 42 1
46 9 43 1
47 9 44 1
48 9 45 1
49 13 46 1
50 16 47 1
51 17 48 1
52 20 49 1
53 20 50 1
54 22 51 1
55 23 52 1
56 24 53 1
57 25 54 1
58 26 55 1
59 27 56 1
60 29 57 1
61 32 58 1
62 33 59 1
63 35 60 1
64 36 61 1
65 29 62 1