@COMMENT
LIGANDBOX_ID = D05494-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D05494
NAME = Pirbenicillin_sodium_(USAN)
MOLECULAR_FORMULA = C24H25N6O5S
MOLECULAR_WEIGHT = 509.566
MOLECULAR_CHARGE = -1
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 167.4100
HOMO = -6.2707
LUMO = -4.0232
mLOGD = -0.079
mLOGPA = -6.325
mLOGS = -1.930
@MOLECULE
D05494-04
62 65 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.6545 0.2106 -0.7371 C.3 1 LGD -0.0040
2 C2 1.9637 1.0273 -0.5499 C.2 1 LGD 0.6601
3 N1 2.1349 1.1911 -1.9087 N.am 1 LGD -0.3567
4 C3 1.0371 0.2715 -2.2493 C.3 1 LGD 0.1550
5 C4 3.4212 1.0143 -2.6040 C.3 1 LGD -0.0646
6 C5 3.2090 -0.0312 -3.7343 C.3 1 LGD 0.1206
7 S1 1.9267 -1.1547 -3.0339 S.3 1 LGD -0.4937
8 C6 2.6496 0.5873 -5.0465 C.3 1 LGD -0.0722
9 C7 4.4997 -0.8356 -4.0229 C.3 1 LGD -0.0722
10 C8 4.0085 2.3590 -3.0790 C.2 1 LGD 0.9508
11 O1 3.2356 3.2292 -3.4446 O.co2 1 LGD -0.7954
12 O2 5.2206 2.4727 -3.0253 O.co2 1 LGD -0.7954
13 N2 -0.5569 0.9937 -0.4564 N.am 1 LGD -0.5569
14 C9 -1.2250 0.9712 0.7573 C.2 1 LGD 0.6513
15 O3 2.7346 1.3712 0.3284 O.2 1 LGD -0.5518
16 C10 -0.6870 0.1873 1.9766 C.3 1 LGD 0.1157
17 N3 -1.8127 -0.3131 2.7767 N.am 1 LGD -0.5772
18 O4 -2.2680 1.6003 0.8101 O.2 1 LGD -0.6508
19 C11 -1.8651 -1.6186 3.2362 C.2 1 LGD 0.6067
20 C12 -3.2406 -2.2169 3.5258 C.3 1 LGD -0.0745
21 C13 0.2218 1.0444 2.8503 C.ar 1 LGD -0.1220
22 C14 -0.2266 2.2743 3.3707 C.ar 1 LGD -0.0893
23 C15 0.6227 3.0577 4.1684 C.ar 1 LGD -0.1225
24 C16 1.9248 2.6174 4.4522 C.ar 1 LGD -0.1015
25 C17 2.3754 1.3905 3.9415 C.ar 1 LGD -0.1225
26 C18 1.5256 0.6051 3.1466 C.ar 1 LGD -0.0893
27 N4 -3.8300 -2.6935 2.2584 N.pl3 1 LGD -0.3539
28 C19 -4.1679 -1.7869 1.2750 C.2 1 LGD 0.5048
29 N5 -5.1517 -0.9232 1.5178 N.pl3 1 LGD -0.4061
30 O5 -0.8443 -2.2756 3.3449 O.2 1 LGD -0.5326
31 C20 -3.4058 -1.7402 -0.0134 C.ar 1 LGD -0.2221
32 C21 -2.3070 -2.5951 -0.2535 C.ar 1 LGD -0.1907
33 C22 -1.6050 -2.4988 -1.4682 C.ar 1 LGD 0.4222
34 N6 -1.9269 -1.6197 -2.4353 N.ar 1 LGD -0.5738
35 C23 -2.9692 -0.7970 -2.2163 C.ar 1 LGD 0.4222
36 C24 -3.7299 -0.8193 -1.0343 C.ar 1 LGD -0.1907
37 H1 0.6452 -0.7974 -0.3124 H 1 LGD 0.0838
38 H2 0.2990 0.6816 -2.9439 H 1 LGD 0.0997
39 H3 4.1307 0.5954 -1.8783 H 1 LGD 0.0651
40 H4 2.3585 -0.2009 -5.7523 H 1 LGD 0.0471
41 H5 1.7648 1.2067 -4.8531 H 1 LGD 0.0471
42 H6 3.4018 1.2155 -5.5403 H 1 LGD 0.0471
43 H7 4.8621 -1.3354 -3.1157 H 1 LGD 0.0471
44 H8 4.3174 -1.6058 -4.7832 H 1 LGD 0.0471
45 H9 5.2967 -0.1766 -4.3902 H 1 LGD 0.0471
46 H10 -0.9496 1.5601 -1.1941 H 1 LGD 0.3472
47 H11 -0.1177 -0.6697 1.6025 H 1 LGD 0.0881
48 H12 -2.6583 0.2383 2.7952 H 1 LGD 0.3139
49 H13 -3.1225 -3.0531 4.2266 H 1 LGD 0.1060
50 H14 -3.8760 -1.4520 3.9896 H 1 LGD 0.1060
51 H15 -1.2326 2.6250 3.1581 H 1 LGD 0.1337
52 H16 0.2720 4.0062 4.5649 H 1 LGD 0.1398
53 H17 2.5828 3.2252 5.0666 H 1 LGD 0.1379
54 H18 3.3832 1.0487 4.1591 H 1 LGD 0.1398
55 H19 1.8852 -0.3423 2.7546 H 1 LGD 0.1337
56 H20 -3.2507 -3.4519 1.9275 H 1 LGD 0.2951
57 H21 -5.3980 -0.2314 0.8256 H 1 LGD 0.3359
58 H22 -1.9834 -3.3233 0.4839 H 1 LGD 0.1498
59 H23 -0.7525 -3.1457 -1.6710 H 1 LGD 0.0646
60 H24 -3.2020 -0.0928 -3.0139 H 1 LGD 0.0646
61 H25 -4.5527 -0.1194 -0.9268 H 1 LGD 0.1498
62 H26 -5.6503 -0.9626 2.3945 H 1 LGD 0.3359
@BOND
1 1 2 1
2 2 3 am
3 3 4 1
4 1 4 1
5 3 5 1
6 5 6 1
7 6 7 1
8 4 7 1
9 6 8 1
10 6 9 1
11 5 10 1
12 10 11 1
13 10 12 2
14 1 13 1
15 13 14 am
16 2 15 2
17 14 16 1
18 16 17 1
19 14 18 2
20 17 19 am
21 19 20 1
22 16 21 1
23 21 22 ar
24 22 23 ar
25 23 24 ar
26 24 25 ar
27 25 26 ar
28 21 26 ar
29 20 27 1
30 27 28 1
31 28 29 2
32 19 30 2
33 28 31 1
34 31 32 ar
35 32 33 ar
36 33 34 ar
37 34 35 ar
38 35 36 ar
39 31 36 ar
40 1 37 1
41 4 38 1
42 5 39 1
43 8 40 1
44 8 41 1
45 8 42 1
46 9 43 1
47 9 44 1
48 9 45 1
49 13 46 1
50 16 47 1
51 17 48 1
52 20 49 1
53 20 50 1
54 22 51 1
55 23 52 1
56 24 53 1
57 25 54 1
58 26 55 1
59 27 56 1
60 29 57 1
61 32 58 1
62 33 59 1
63 35 60 1
64 36 61 1
65 29 62 1