@COMMENT
LIGANDBOX_ID = D05589-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D05589
NAME = Pralatrexate_(JAN/USAN/INN)_10-Propargyl-10-deazaaminopterin_Folotyn_(TN)
MOLECULAR_FORMULA = C23H23N7O5
MOLECULAR_WEIGHT = 477.481
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 9
NUM_OF_CHIRAL_ATOMS = 2
TPSA = 207.3000
HOMO = -1.3166
LUMO = 2.0450
mLOGPA = -6.260
mLOGD = -1.166
mLOGS = -1.894
@MOLECULE
D05589-01
56 58 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 31.4840 -19.2610 -0.8060 C.ar 1 LGD 0.0337
2 C2 32.0870 -20.0030 0.2600 C.ar 1 LGD 0.6519
3 N1 31.3150 -17.9180 -0.7290 N.ar 1 LGD -0.6160
4 C3 31.0800 -19.9870 -1.9530 C.ar 1 LGD 0.7026
5 N2 32.4920 -19.3500 1.3740 N.ar 1 LGD -0.6275
6 N3 32.2410 -21.3380 0.1270 N.ar 1 LGD -0.7885
7 C4 31.7310 -17.2990 0.3890 C.ar 1 LGD 0.2616
8 N4 31.2530 -21.3160 -2.0490 N.ar 1 LGD -0.8568
9 N5 30.4950 -19.3460 -3.0220 N.pl3 1 LGD -0.9564
10 C5 32.3180 -18.0180 1.4400 C.ar 1 LGD 0.3763
11 C6 31.8250 -21.9340 -1.0040 C.ar 1 LGD 0.9521
12 C7 31.5870 -15.7820 0.4410 C.3 1 LGD -0.1075
13 N6 32.0060 -23.2880 -1.1010 N.pl3 1 LGD -0.9525
14 C8 32.6810 -15.0710 -0.4070 C.3 1 LGD -0.0006
15 C9 34.0730 -15.5780 -0.0150 C.ar 1 LGD -0.1057
16 C10 32.5900 -13.5210 -0.3050 C.3 1 LGD 0.0038
17 C11 31.3790 -12.9700 -0.9300 C.1 1 LGD -0.1229
18 C12 30.3850 -12.5510 -1.4510 C.1 1 LGD -0.1929
19 C13 34.6400 -15.2520 1.2320 C.ar 1 LGD -0.1481
20 C14 35.9000 -15.7530 1.5940 C.ar 1 LGD -0.0912
21 C15 36.6170 -16.5960 0.7210 C.ar 1 LGD -0.0923
22 C16 36.0440 -16.9260 -0.5250 C.ar 1 LGD -0.0912
23 C17 34.7850 -16.4210 -0.8870 C.ar 1 LGD -0.1481
24 C18 37.9700 -17.1290 1.1260 C.2 1 LGD 0.6489
25 N7 38.6690 -17.9590 0.2580 N.am 1 LGD -0.5276
26 O1 38.4680 -16.8480 2.2030 O.2 1 LGD -0.6136
27 C19 40.0000 -18.5010 0.5780 C.3 1 LGD 0.0090
28 C20 39.8340 -19.8280 1.3720 C.3 1 LGD -0.0580
29 C21 41.1650 -20.3360 1.9840 C.3 1 LGD -0.1634
30 C22 40.9740 -21.6410 2.7630 C.2 1 LGD 0.8954
31 C23 40.7980 -18.6610 -0.7320 C.2 1 LGD 0.8831
32 O2 41.1190 -17.4850 -1.3190 O.co2 1 LGD -0.8475
33 O3 41.1010 -19.7300 -1.2310 O.co2 1 LGD -0.8475
34 O4 40.3550 -21.4910 3.9560 O.co2 1 LGD -0.8777
35 O5 41.4070 -22.7160 2.3910 O.co2 1 LGD -0.8777
36 H1 30.5370 -18.3380 -3.0470 H 1 LGD 0.4411
37 H2 30.4220 -19.8520 -3.8930 H 1 LGD 0.4411
38 H3 32.6710 -17.5230 2.3440 H 1 LGD 0.0444
39 H4 30.5910 -15.4960 0.0800 H 1 LGD 0.0502
40 H5 31.6480 -15.4370 1.4810 H 1 LGD 0.0502
41 H6 32.6220 -23.7270 -0.4330 H 1 LGD 0.4431
42 H7 31.9010 -23.7090 -2.0120 H 1 LGD 0.4431
43 H8 32.5040 -15.3360 -1.4580 H 1 LGD 0.0610
44 H9 32.6210 -13.2040 0.7450 H 1 LGD 0.0655
45 H10 33.4640 -13.0740 -0.7970 H 1 LGD 0.0655
46 H11 29.5080 -12.1780 -1.9310 H 1 LGD 0.1572
47 H12 34.1030 -14.6170 1.9300 H 1 LGD 0.1178
48 H13 36.3150 -15.4860 2.5620 H 1 LGD 0.1528
49 H14 36.5640 -17.5760 -1.2220 H 1 LGD 0.1528
50 H15 34.3590 -16.6980 -1.8470 H 1 LGD 0.1178
51 H16 38.2490 -18.1980 -0.6280 H 1 LGD 0.2972
52 H17 40.5470 -17.7820 1.2000 H 1 LGD 0.0692
53 H18 39.1130 -19.6710 2.1840 H 1 LGD 0.0334
54 H19 39.4050 -20.6010 0.7200 H 1 LGD 0.0334
55 H20 41.9130 -20.5050 1.2000 H 1 LGD 0.0280
56 H21 41.5760 -19.5770 2.6630 H 1 LGD 0.0280
@BOND
1 1 2 ar
2 1 3 ar
3 1 4 ar
4 2 5 ar
5 2 6 ar
6 3 7 ar
7 4 8 ar
8 4 9 1
9 5 10 ar
10 6 11 ar
11 7 12 1
12 11 13 1
13 12 14 1
14 14 15 1
15 7 10 ar
16 8 11 ar
17 14 16 1
18 16 17 1
19 17 18 3
20 15 19 ar
21 19 20 ar
22 20 21 ar
23 21 22 ar
24 22 23 ar
25 15 23 ar
26 21 24 1
27 24 25 am
28 24 26 2
29 25 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 27 31 1
34 31 32 1
35 31 33 2
36 30 34 1
37 30 35 2
38 9 36 1
39 9 37 1
40 10 38 1
41 12 39 1
42 12 40 1
43 13 41 1
44 13 42 1
45 14 43 1
46 16 44 1
47 16 45 1
48 18 46 1
49 19 47 1
50 20 48 1
51 22 49 1
52 23 50 1
53 25 51 1
54 27 52 1
55 28 53 1
56 28 54 1
57 29 55 1
58 29 56 1