@COMMENT
LIGANDBOX_ID = D05589-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D05589
NAME = Pralatrexate_(JAN/USAN/INN)_10-Propargyl-10-deazaaminopterin_Folotyn_(TN)
MOLECULAR_FORMULA = C23H23N7O5
MOLECULAR_WEIGHT = 477.481
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 9
NUM_OF_CHIRAL_ATOMS = 2
TPSA = 207.3000
HOMO = -1.3166
LUMO = 2.0450
mLOGPA = -6.260
mLOGD = -1.166
mLOGS = -1.894
@MOLECULE
D05589-02
56 58 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -5.4217 1.1231 -1.6200 C.ar 1 LGD 0.0403
2 C2 -5.6504 2.0899 -2.6484 C.ar 1 LGD 0.6424
3 N1 -4.1696 0.7215 -1.2791 N.ar 1 LGD -0.5968
4 C3 -6.5643 0.6047 -0.9684 C.ar 1 LGD 0.7004
5 N2 -4.5955 2.6150 -3.3103 N.ar 1 LGD -0.6540
6 N3 -6.9146 2.4583 -2.9370 N.ar 1 LGD -0.8150
7 C4 -3.1404 1.2716 -1.9493 C.ar 1 LGD 0.2749
8 N4 -7.8070 0.9963 -1.2786 N.ar 1 LGD -0.8588
9 N5 -6.4413 -0.3287 0.0263 N.pl3 1 LGD -0.9357
10 C5 -3.3589 2.2107 -2.9700 C.ar 1 LGD 0.3705
11 C6 -7.9226 1.9040 -2.2528 C.ar 1 LGD 0.9427
12 C7 -1.7322 0.8316 -1.5635 C.3 1 LGD -0.1169
13 N6 -9.1804 2.3119 -2.5693 N.pl3 1 LGD -0.9447
14 C8 -1.2208 1.3959 -0.1962 C.3 1 LGD 0.0058
15 C9 0.1174 0.7723 0.2528 C.ar 1 LGD -0.1025
16 C10 -1.0912 2.9530 -0.2044 C.3 1 LGD 0.0003
17 C11 -2.3749 3.6676 -0.1147 C.1 1 LGD -0.1305
18 C12 -3.4291 4.2355 -0.0719 C.1 1 LGD -0.1871
19 C13 0.5069 0.9006 1.6005 C.ar 1 LGD -0.1484
20 C14 1.7344 0.3881 2.0498 C.ar 1 LGD -0.0937
21 C15 2.6015 -0.2787 1.1628 C.ar 1 LGD -0.0973
22 C16 2.2097 -0.4228 -0.1831 C.ar 1 LGD -0.0937
23 C17 0.9875 0.0996 -0.6338 C.ar 1 LGD -0.1484
24 C18 3.9275 -0.8087 1.6506 C.2 1 LGD 0.6385
25 N7 4.7019 -1.5843 0.7983 N.am 1 LGD -0.5306
26 O1 4.3340 -0.5634 2.7746 O.2 1 LGD -0.6203
27 C19 6.0419 -2.0832 1.1516 C.3 1 LGD -0.0378
28 C20 5.9127 -3.4293 1.9152 C.3 1 LGD -0.0489
29 C21 7.2720 -3.9507 2.4423 C.3 1 LGD -0.2067
30 C22 7.1073 -5.2383 3.2577 C.2 1 LGD 0.9349
31 C23 6.8899 -2.2165 -0.1285 C.2 1 LGD 0.9416
32 O2 7.9567 -1.6273 -0.1519 O.co2 1 LGD -0.8427
33 O3 6.4265 -2.8742 -1.0460 O.co2 1 LGD -0.8427
34 O4 6.8052 -5.1188 4.4326 O.co2 1 LGD -0.8677
35 O5 7.3139 -6.2937 2.6843 O.co2 1 LGD -0.8677
36 H1 -5.5196 -0.4625 0.4154 H 1 LGD 0.4459
37 H2 -7.2478 -0.4818 0.6117 H 1 LGD 0.4459
38 H3 -2.5314 2.6589 -3.5181 H 1 LGD 0.0386
39 H4 -1.7043 -0.2654 -1.5268 H 1 LGD 0.0633
40 H5 -1.0384 1.1296 -2.3596 H 1 LGD 0.0633
41 H6 -9.2528 3.1618 -3.1060 H 1 LGD 0.4343
42 H7 -9.9017 2.0977 -1.8994 H 1 LGD 0.4343
43 H8 -1.9660 1.1245 0.5640 H 1 LGD 0.0620
44 H9 -0.4808 3.2779 0.6473 H 1 LGD 0.0659
45 H10 -0.5578 3.2784 -1.1064 H 1 LGD 0.0659
46 H11 -4.3731 4.7324 -0.0518 H 1 LGD 0.1604
47 H12 -0.1412 1.4143 2.3053 H 1 LGD 0.1177
48 H13 2.0107 0.5155 3.0929 H 1 LGD 0.1553
49 H14 2.8531 -0.9272 -0.8977 H 1 LGD 0.1553
50 H15 0.7405 -0.0228 -1.6827 H 1 LGD 0.1177
51 H16 4.3452 -1.8003 -0.1206 H 1 LGD 0.3061
52 H17 6.5417 -1.3529 1.8012 H 1 LGD 0.0586
53 H18 5.2332 -3.2961 2.7670 H 1 LGD 0.0277
54 H19 5.4569 -4.1856 1.2628 H 1 LGD 0.0277
55 H20 7.9550 -4.1431 1.6045 H 1 LGD 0.0252
56 H21 7.7448 -3.1883 3.0749 H 1 LGD 0.0252
@BOND
1 1 2 ar
2 1 3 ar
3 1 4 ar
4 2 5 ar
5 2 6 ar
6 3 7 ar
7 4 8 ar
8 4 9 1
9 5 10 ar
10 6 11 ar
11 7 12 1
12 11 13 1
13 12 14 1
14 14 15 1
15 7 10 ar
16 8 11 ar
17 14 16 1
18 16 17 1
19 17 18 3
20 15 19 ar
21 19 20 ar
22 20 21 ar
23 21 22 ar
24 22 23 ar
25 15 23 ar
26 21 24 1
27 24 25 am
28 24 26 2
29 25 27 1
30 27 28 1
31 28 29 1
32 29 30 1
33 27 31 1
34 31 32 1
35 31 33 2
36 30 34 1
37 30 35 2
38 9 36 1
39 9 37 1
40 10 38 1
41 12 39 1
42 12 40 1
43 13 41 1
44 13 42 1
45 14 43 1
46 16 44 1
47 16 45 1
48 18 46 1
49 19 47 1
50 20 48 1
51 22 49 1
52 23 50 1
53 25 51 1
54 27 52 1
55 28 53 1
56 28 54 1
57 29 55 1
58 29 56 1