@COMMENT
LIGANDBOX_ID = D06199-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06199
NAME = Trabectedin_(JAN/USAN/INN)_Yondelis_(TN)
MOLECULAR_FORMULA = C39H43N3O11S
MOLECULAR_WEIGHT = 761.848
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 7
TPSA = 168.7200
HOMO = -15.1091
LUMO = -9.4642
mLOGS = -0.709
mLOGPA = -4.375
mLOGD = 0.029
@MOLECULE
D06199-01
100 108 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 27.2640 -13.2860 1.2370 C.3 1 LGD 0.1776
2 C2 28.7080 -12.9960 1.7230 C.ar 1 LGD -0.1881
3 C3 28.9610 -12.0690 2.7650 C.ar 1 LGD -0.0707
4 C4 27.8210 -11.3470 3.4770 C.3 1 LGD -0.0609
5 C5 26.5090 -11.3840 2.6760 C.3 1 LGD 0.1053
6 N1 26.2840 -12.7600 2.2210 N.4 1 LGD -0.7344
7 C6 21.3620 -14.6050 -1.9640 C.3 1 LGD 0.0754
8 C7 22.5940 -13.9020 -2.5930 C.3 1 LGD 0.3184
9 N2 23.8660 -14.3390 -1.9570 N.4 1 LGD -0.7346
10 C8 24.0030 -15.8170 -1.7820 C.3 1 LGD 0.0943
11 C9 22.6870 -16.5150 -1.2610 C.3 1 LGD 0.1621
12 C10 22.3920 -16.2580 0.2190 C.ar 1 LGD -0.2335
13 C11 21.6900 -15.0880 0.5810 C.ar 1 LGD -0.0895
14 C12 21.1190 -14.1490 -0.4880 C.3 1 LGD -0.0540
15 C13 21.4480 -14.8110 1.9380 C.ar 1 LGD -0.1324
16 C14 21.8910 -15.6880 2.9430 C.ar 1 LGD 0.0128
17 C15 22.5670 -16.8690 2.5770 C.ar 1 LGD 0.0452
18 C16 22.7960 -17.1680 1.2210 C.ar 1 LGD 0.1874
19 C17 25.2850 -16.1210 -0.9470 C.3 1 LGD 0.1429
20 C18 26.4750 -15.6830 -1.7870 C.ar 1 LGD -0.1767
21 C19 26.3640 -14.4770 -2.5170 C.ar 1 LGD -0.1414
22 C20 25.0780 -13.6300 -2.5040 C.3 1 LGD 0.1961
23 C21 27.6500 -16.4820 -1.8820 C.ar 1 LGD 0.1490
24 C22 28.7390 -16.0750 -2.6940 C.ar 1 LGD -0.0316
25 C23 28.6020 -14.8560 -3.3710 C.ar 1 LGD 0.1190
26 C24 27.4630 -14.1020 -3.2980 C.ar 1 LGD 0.1004
27 O1 29.5070 -14.2710 -4.2050 O.3 1 LGD -0.2801
28 C25 28.9040 -13.0290 -4.6710 C.3 1 LGD 0.3305
29 O2 27.5710 -12.9950 -4.0850 O.3 1 LGD -0.3270
30 O3 22.6070 -14.1880 -3.9920 O.3 1 LGD -0.5005
31 N3 21.5320 -16.0750 -2.0740 N.4 1 LGD -0.6551
32 C26 20.2950 -16.8520 -1.8420 C.3 1 LGD 0.1048
33 O4 23.4380 -18.3320 0.8950 O.3 1 LGD -0.5021
34 O5 23.0270 -17.7310 3.5480 O.3 1 LGD -0.3298
35 C27 21.6320 -15.3580 4.4090 C.3 1 LGD -0.0673
36 C28 24.3880 -17.5990 3.9940 C.3 1 LGD 0.1229
37 C29 25.2710 -12.2550 -1.7990 C.3 1 LGD 0.1429
38 S1 25.2570 -15.2530 0.7160 S.3 1 LGD -0.4143
39 O6 25.7000 -12.4850 -0.4410 O.3 1 LGD -0.4784
40 C30 27.0320 -12.6200 -0.1450 C.2 1 LGD 0.6144
41 O7 27.9350 -12.2540 -0.8800 O.2 1 LGD -0.3997
42 C31 29.9950 -16.9260 -2.8610 C.3 1 LGD -0.0609
43 C32 27.0120 -14.8230 1.1280 C.3 1 LGD 0.0121
44 O8 27.6960 -17.6860 -1.2110 O.3 1 LGD -0.3716
45 C33 28.4870 -17.9420 -0.1300 C.2 1 LGD 0.6466
46 C34 29.8050 -13.6270 1.0920 C.ar 1 LGD -0.1191
47 C35 31.1280 -13.3600 1.5010 C.ar 1 LGD 0.0843
48 C36 31.3580 -12.4570 2.5510 C.ar 1 LGD 0.1923
49 C37 30.2810 -11.8160 3.1770 C.ar 1 LGD -0.1141
50 O9 32.2220 -13.9540 0.8940 O.3 1 LGD -0.3432
51 C38 32.1070 -14.9010 -0.1840 C.3 1 LGD 0.1382
52 O10 32.6340 -12.1960 2.9580 O.3 1 LGD -0.4467
53 C39 28.2390 -19.3440 0.4180 C.3 1 LGD -0.1410
54 O11 29.2890 -17.1570 0.3460 O.2 1 LGD -0.5145
55 H1 27.6530 -11.8170 4.4550 H 1 LGD 0.1038
56 H2 28.0900 -10.3010 3.6750 H 1 LGD 0.1038
57 H3 25.6770 -11.0600 3.3150 H 1 LGD 0.1155
58 H4 26.5700 -10.7070 1.8140 H 1 LGD 0.1155
59 H5 25.3610 -12.8360 1.8140 H 1 LGD 0.4551
60 H6 20.4880 -14.2970 -2.5530 H 1 LGD 0.1671
61 H7 22.4890 -12.8180 -2.4660 H 1 LGD 0.1756
62 H8 24.1730 -16.2500 -2.7760 H 1 LGD 0.1148
63 H9 22.8170 -17.5950 -1.4080 H 1 LGD 0.1633
64 H10 20.0350 -14.0720 -0.3340 H 1 LGD 0.1087
65 H11 21.5120 -13.1350 -0.3420 H 1 LGD 0.1087
66 H12 20.9080 -13.9090 2.2110 H 1 LGD 0.1704
67 H13 25.3370 -17.2020 -0.7660 H 1 LGD 0.1538
68 H14 24.8930 -13.3970 -3.5600 H 1 LGD 0.1476
69 H15 29.4900 -12.1740 -4.3150 H 1 LGD 0.1149
70 H16 28.8370 -13.0290 -5.7660 H 1 LGD 0.1149
71 H17 22.5270 -15.1550 -4.0720 H 1 LGD 0.4113
72 H18 19.9310 -16.7220 -0.8150 H 1 LGD 0.1275
73 H19 19.5080 -16.5270 -2.5330 H 1 LGD 0.1275
74 H20 20.4810 -17.9200 -2.0120 H 1 LGD 0.1275
75 H21 23.5760 -18.8220 1.7260 H 1 LGD 0.4805
76 H22 21.2800 -16.2390 4.9590 H 1 LGD 0.0788
77 H23 22.5490 -15.0020 4.8950 H 1 LGD 0.0788
78 H24 20.8710 -14.5760 4.5190 H 1 LGD 0.0788
79 H25 24.5460 -16.6100 4.4410 H 1 LGD 0.0514
80 H26 24.6110 -18.3660 4.7470 H 1 LGD 0.0514
81 H27 25.0800 -17.7200 3.1520 H 1 LGD 0.0514
82 H28 26.0000 -11.6410 -2.3420 H 1 LGD 0.1161
83 H29 24.3170 -11.7150 -1.7950 H 1 LGD 0.1161
84 H30 29.7530 -17.9960 -2.8810 H 1 LGD 0.0814
85 H31 30.5160 -16.6940 -3.7990 H 1 LGD 0.0814
86 H32 30.6990 -16.7540 -2.0390 H 1 LGD 0.0814
87 H33 27.6790 -15.2500 0.3790 H 1 LGD 0.1320
88 H34 27.2530 -15.2920 2.0890 H 1 LGD 0.1320
89 H35 29.6230 -14.3080 0.2680 H 1 LGD 0.1418
90 H36 30.4730 -11.1150 3.9840 H 1 LGD 0.1869
91 H37 31.5540 -15.7880 0.1470 H 1 LGD 0.0555
92 H38 31.5880 -14.4490 -1.0380 H 1 LGD 0.0555
93 H39 33.1060 -15.2170 -0.5100 H 1 LGD 0.0555
94 H40 33.2250 -12.7310 2.3970 H 1 LGD 0.4676
95 H41 28.8880 -19.5370 1.2810 H 1 LGD 0.0929
96 H42 27.1910 -19.4420 0.7280 H 1 LGD 0.0929
97 H43 28.4440 -20.0900 -0.3590 H 1 LGD 0.0929
98 H44 26.4103 -13.3829 2.9930 H 1 LGD 0.4551
99 H45 23.7363 -14.3832 -0.9664 H 1 LGD 0.4766
100 H46 22.0102 -16.2845 -2.9269 H 1 LGD 0.4263
@BOND
1 1 2 1
2 2 3 ar
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 1
11 11 12 1
12 12 13 ar
13 13 14 1
14 7 14 1
15 13 15 ar
16 15 16 ar
17 16 17 ar
18 17 18 ar
19 12 18 ar
20 10 19 1
21 19 20 1
22 20 21 ar
23 21 22 1
24 9 22 1
25 20 23 ar
26 23 24 ar
27 24 25 ar
28 25 26 ar
29 21 26 ar
30 25 27 1
31 27 28 1
32 28 29 1
33 26 29 1
34 8 30 1
35 7 31 1
36 11 31 1
37 31 32 1
38 18 33 1
39 17 34 1
40 16 35 1
41 34 36 1
42 22 37 1
43 19 38 1
44 37 39 1
45 39 40 1
46 40 41 2
47 24 42 1
48 1 40 1
49 1 43 1
50 38 43 1
51 23 44 1
52 44 45 1
53 2 46 ar
54 46 47 ar
55 47 48 ar
56 48 49 ar
57 3 49 ar
58 47 50 1
59 50 51 1
60 48 52 1
61 45 53 1
62 45 54 2
63 4 55 1
64 4 56 1
65 5 57 1
66 5 58 1
67 6 59 1
68 7 60 1
69 8 61 1
70 10 62 1
71 11 63 1
72 14 64 1
73 14 65 1
74 15 66 1
75 19 67 1
76 22 68 1
77 28 69 1
78 28 70 1
79 30 71 1
80 32 72 1
81 32 73 1
82 32 74 1
83 33 75 1
84 35 76 1
85 35 77 1
86 35 78 1
87 36 79 1
88 36 80 1
89 36 81 1
90 37 82 1
91 37 83 1
92 42 84 1
93 42 85 1
94 42 86 1
95 43 87 1
96 43 88 1
97 46 89 1
98 49 90 1
99 51 91 1
100 51 92 1
101 51 93 1
102 52 94 1
103 53 95 1
104 53 96 1
105 53 97 1
106 6 98 1
107 9 99 1
108 31 100 1