@COMMENT
LIGANDBOX_ID = D06199-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06199
NAME = Trabectedin_(JAN/USAN/INN)_Yondelis_(TN)
MOLECULAR_FORMULA = C39H43N3O11S
MOLECULAR_WEIGHT = 761.848
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 7
TPSA = 168.7200
HOMO = -15.1091
LUMO = -9.4642
mLOGS = -0.709
mLOGPA = -4.375
mLOGD = 0.029
@MOLECULE
D06199-03
100 108 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.3226 1.5839 1.1995 C.3 1 LGD 0.1861
2 C2 2.1893 1.7523 2.4717 C.ar 1 LGD -0.1868
3 C3 3.1006 2.8276 2.5978 C.ar 1 LGD -0.0710
4 C4 3.2738 3.8413 1.4750 C.3 1 LGD -0.0595
5 C5 2.0956 3.8111 0.4886 C.3 1 LGD 0.1081
6 N1 1.8669 2.4090 0.0906 N.4 1 LGD -0.7398
7 C6 -3.3377 0.5404 -3.6696 C.3 1 LGD 0.0858
8 C7 -3.6016 0.9113 -2.1899 C.3 1 LGD 0.3099
9 N2 -2.4912 0.4538 -1.3080 N.4 1 LGD -0.7206
10 C8 -2.1472 -0.9843 -1.5080 C.3 1 LGD 0.1237
11 C9 -1.9672 -1.3672 -3.0214 C.3 1 LGD 0.1938
12 C10 -0.7358 -0.7509 -3.6831 C.ar 1 LGD -0.2300
13 C11 -0.7946 0.5573 -4.2012 C.ar 1 LGD -0.0898
14 C12 -2.1180 1.3159 -4.2546 C.3 1 LGD -0.0552
15 C13 0.3572 1.1401 -4.7562 C.ar 1 LGD -0.1336
16 C14 1.5710 0.4320 -4.8037 C.ar 1 LGD 0.0106
17 C15 1.6177 -0.8868 -4.3109 C.ar 1 LGD 0.0470
18 C16 0.4622 -1.4866 -3.7783 C.ar 1 LGD 0.1859
19 C17 -0.9137 -1.3081 -0.6158 C.3 1 LGD 0.1394
20 C18 -1.4005 -1.2329 0.8174 C.ar 1 LGD -0.1776
21 C19 -2.2996 -0.1952 1.1539 C.ar 1 LGD -0.1473
22 C20 -2.8110 0.8202 0.1137 C.3 1 LGD 0.1691
23 C21 -1.0070 -2.1989 1.7856 C.ar 1 LGD 0.1504
24 C22 -1.4894 -2.1256 3.1165 C.ar 1 LGD -0.0305
25 C23 -2.3504 -1.0620 3.4186 C.ar 1 LGD 0.1177
26 C24 -2.7479 -0.1506 2.4785 C.ar 1 LGD 0.1008
27 O1 -2.9340 -0.7910 4.6192 O.3 1 LGD -0.2793
28 C25 -3.7466 0.4025 4.4286 C.3 1 LGD 0.3301
29 O2 -3.6125 0.7507 3.0206 O.3 1 LGD -0.3266
30 O3 -4.8506 0.3464 -1.7863 O.3 1 LGD -0.5181
31 N3 -3.1770 -0.9347 -3.7593 N.4 1 LGD -0.6699
32 C26 -3.1585 -1.4037 -5.1639 C.3 1 LGD 0.0945
33 O4 0.5160 -2.7762 -3.3276 O.3 1 LGD -0.5042
34 O5 2.8006 -1.5903 -4.3336 O.3 1 LGD -0.3297
35 C27 2.8132 1.0902 -5.3950 C.3 1 LGD -0.0671
36 C28 3.6308 -1.5798 -3.1606 C.3 1 LGD 0.1241
37 C29 -2.2919 2.2634 0.3809 C.3 1 LGD 0.1328
38 S1 0.5046 -0.1225 -0.9284 S.3 1 LGD -0.4144
39 O6 -0.8508 2.2491 0.3511 O.3 1 LGD -0.4810
40 C30 -0.1435 1.9919 1.4981 C.2 1 LGD 0.6157
41 O7 -0.6077 2.0819 2.6231 O.2 1 LGD -0.3943
42 C31 -1.1234 -3.1633 4.1751 C.3 1 LGD -0.0612
43 C32 1.3587 0.1090 0.6994 C.3 1 LGD 0.0074
44 O8 -0.1826 -3.2353 1.4007 O.3 1 LGD -0.3712
45 C33 1.1198 -3.3748 1.7837 C.2 1 LGD 0.6476
46 C34 2.0413 0.8531 3.5524 C.ar 1 LGD -0.1210
47 C35 2.8031 1.0045 4.7299 C.ar 1 LGD 0.0857
48 C36 3.7219 2.0619 4.8269 C.ar 1 LGD 0.1938
49 C37 3.8677 2.9669 3.7673 C.ar 1 LGD -0.1137
50 O9 2.6684 0.1476 5.8085 O.3 1 LGD -0.3421
51 C38 1.7623 -0.9695 5.8176 C.3 1 LGD 0.1382
52 O10 4.4683 2.2186 5.9592 O.3 1 LGD -0.4485
53 C39 1.7657 -4.5872 1.1230 C.3 1 LGD -0.1416
54 O11 1.7029 -2.6267 2.5490 O.2 1 LGD -0.5149
55 H1 4.2028 3.6270 0.9317 H 1 LGD 0.1042
56 H2 3.3730 4.8551 1.8832 H 1 LGD 0.1042
57 H3 2.3324 4.4120 -0.3917 H 1 LGD 0.1128
58 H4 1.1946 4.2074 0.9611 H 1 LGD 0.1128
59 H5 1.2072 2.3771 -0.6754 H 1 LGD 0.4545
60 H6 -4.2245 0.8258 -4.2393 H 1 LGD 0.1633
61 H7 -3.6889 1.9972 -2.1116 H 1 LGD 0.1667
62 H8 -2.9856 -1.5729 -1.1323 H 1 LGD 0.1177
63 H9 -1.9003 -2.4549 -3.0892 H 1 LGD 0.1607
64 H10 -2.3401 1.5444 -5.3046 H 1 LGD 0.1075
65 H11 -2.0174 2.2870 -3.7533 H 1 LGD 0.1075
66 H12 0.3050 2.1473 -5.1609 H 1 LGD 0.1707
67 H13 -0.5717 -2.3257 -0.8393 H 1 LGD 0.1532
68 H14 -3.8966 0.8481 0.2173 H 1 LGD 0.1443
69 H15 -3.3622 1.2180 5.0523 H 1 LGD 0.1153
70 H16 -4.7947 0.1872 4.6665 H 1 LGD 0.1153
71 H17 -4.7039 -0.5960 -1.5987 H 1 LGD 0.4224
72 H18 -2.3074 -0.9684 -5.6908 H 1 LGD 0.1232
73 H19 -4.0820 -1.1046 -5.6630 H 1 LGD 0.1232
74 H20 -3.0739 -2.4918 -5.1852 H 1 LGD 0.1232
75 H21 1.4039 -3.1216 -3.5296 H 1 LGD 0.4810
76 H22 3.3358 0.4088 -6.0781 H 1 LGD 0.0786
77 H23 3.5156 1.3792 -4.6035 H 1 LGD 0.0786
78 H24 2.5601 1.9936 -5.9638 H 1 LGD 0.0786
79 H25 3.9418 -0.5542 -2.9258 H 1 LGD 0.0508
80 H26 4.5270 -2.1892 -3.3305 H 1 LGD 0.0508
81 H27 3.0840 -1.9880 -2.3013 H 1 LGD 0.0508
82 H28 -2.6656 2.6391 1.3419 H 1 LGD 0.1184
83 H29 -2.6673 2.9312 -0.4037 H 1 LGD 0.1184
84 H30 -1.0671 -4.1709 3.7447 H 1 LGD 0.0818
85 H31 -1.8672 -3.1971 4.9808 H 1 LGD 0.0818
86 H32 -0.1519 -2.9357 4.6290 H 1 LGD 0.0818
87 H33 0.9079 -0.5396 1.4497 H 1 LGD 0.1328
88 H34 2.4032 -0.2043 0.5791 H 1 LGD 0.1328
89 H35 1.3144 0.0516 3.4804 H 1 LGD 0.1417
90 H36 4.5758 3.7862 3.8582 H 1 LGD 0.1872
91 H37 2.0269 -1.6789 5.0242 H 1 LGD 0.0554
92 H38 0.7306 -0.6271 5.6672 H 1 LGD 0.0554
93 H39 1.8205 -1.4889 6.7820 H 1 LGD 0.0554
94 H40 4.2233 1.5057 6.5758 H 1 LGD 0.4684
95 H41 2.8077 -4.6908 1.4507 H 1 LGD 0.0934
96 H42 1.7434 -4.4729 0.0322 H 1 LGD 0.0934
97 H43 1.2142 -5.4969 1.3905 H 1 LGD 0.0934
98 H44 2.7414 2.0091 -0.2181 H 1 LGD 0.4545
99 H45 -1.6564 0.9659 -1.5634 H 1 LGD 0.4796
100 H46 -3.9790 -1.3607 -3.3166 H 1 LGD 0.4448
@BOND
1 1 2 1
2 2 3 ar
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 1
11 11 12 1
12 12 13 ar
13 13 14 1
14 7 14 1
15 13 15 ar
16 15 16 ar
17 16 17 ar
18 17 18 ar
19 12 18 ar
20 10 19 1
21 19 20 1
22 20 21 ar
23 21 22 1
24 9 22 1
25 20 23 ar
26 23 24 ar
27 24 25 ar
28 25 26 ar
29 21 26 ar
30 25 27 1
31 27 28 1
32 28 29 1
33 26 29 1
34 8 30 1
35 7 31 1
36 11 31 1
37 31 32 1
38 18 33 1
39 17 34 1
40 16 35 1
41 34 36 1
42 22 37 1
43 19 38 1
44 37 39 1
45 39 40 1
46 40 41 2
47 24 42 1
48 1 40 1
49 1 43 1
50 38 43 1
51 23 44 1
52 44 45 1
53 2 46 ar
54 46 47 ar
55 47 48 ar
56 48 49 ar
57 3 49 ar
58 47 50 1
59 50 51 1
60 48 52 1
61 45 53 1
62 45 54 2
63 4 55 1
64 4 56 1
65 5 57 1
66 5 58 1
67 6 59 1
68 7 60 1
69 8 61 1
70 10 62 1
71 11 63 1
72 14 64 1
73 14 65 1
74 15 66 1
75 19 67 1
76 22 68 1
77 28 69 1
78 28 70 1
79 30 71 1
80 32 72 1
81 32 73 1
82 32 74 1
83 33 75 1
84 35 76 1
85 35 77 1
86 35 78 1
87 36 79 1
88 36 80 1
89 36 81 1
90 37 82 1
91 37 83 1
92 42 84 1
93 42 85 1
94 42 86 1
95 43 87 1
96 43 88 1
97 46 89 1
98 49 90 1
99 51 91 1
100 51 92 1
101 51 93 1
102 52 94 1
103 53 95 1
104 53 96 1
105 53 97 1
106 6 98 1
107 9 99 1
108 31 100 1