@COMMENT
LIGANDBOX_ID = D06199-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06199
NAME = Trabectedin_(JAN/USAN/INN)_Yondelis_(TN)
MOLECULAR_FORMULA = C39H43N3O11S
MOLECULAR_WEIGHT = 761.848
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 7
TPSA = 168.7200
HOMO = -15.1091
LUMO = -9.4642
mLOGS = -0.709
mLOGPA = -4.375
mLOGD = 0.029
@MOLECULE
D06199-04
100 108 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.3054 1.5808 1.2244 C.3 1 LGD 0.1863
2 C2 2.7469 1.8740 1.7092 C.ar 1 LGD -0.1867
3 C3 2.9937 2.8044 2.7466 C.ar 1 LGD -0.0710
4 C4 1.8460 3.5303 3.4351 C.3 1 LGD -0.0596
5 C5 0.5533 3.4754 2.6058 C.3 1 LGD 0.1081
6 N1 0.3166 2.0717 2.2183 N.4 1 LGD -0.7398
7 C6 -4.5759 0.2708 -1.9775 C.3 1 LGD 0.0858
8 C7 -3.3279 0.9715 -2.5677 C.3 1 LGD 0.3098
9 N2 -2.0830 0.5435 -1.8699 N.4 1 LGD -0.7205
10 C8 -1.9468 -0.9399 -1.7855 C.3 1 LGD 0.1236
11 C9 -3.2511 -1.6475 -1.2685 C.3 1 LGD 0.1939
12 C10 -3.5732 -1.3713 0.1988 C.ar 1 LGD -0.2301
13 C11 -4.2709 -0.2023 0.5590 C.ar 1 LGD -0.0897
14 C12 -4.8543 0.7180 -0.5099 C.3 1 LGD -0.0552
15 C13 -4.5095 0.0773 1.9152 C.ar 1 LGD -0.1336
16 C14 -4.0621 -0.7982 2.9205 C.ar 1 LGD 0.0104
17 C15 -3.3915 -1.9815 2.5536 C.ar 1 LGD 0.0471
18 C16 -3.1723 -2.2813 1.1970 C.ar 1 LGD 0.1861
19 C17 -0.6734 -1.2546 -0.9472 C.3 1 LGD 0.1396
20 C18 0.5045 -0.8167 -1.7939 C.ar 1 LGD -0.1777
21 C19 0.3812 0.3902 -2.5195 C.ar 1 LGD -0.1474
22 C20 -0.9062 1.2367 -2.4963 C.3 1 LGD 0.1691
23 C21 1.6798 -1.6126 -1.8968 C.ar 1 LGD 0.1504
24 C22 2.7633 -1.1985 -2.7116 C.ar 1 LGD -0.0306
25 C23 2.6159 0.0206 -3.3868 C.ar 1 LGD 0.1177
26 C24 1.4739 0.7703 -3.3061 C.ar 1 LGD 0.1008
27 O1 3.5158 0.6146 -4.2192 O.3 1 LGD -0.2793
28 C25 2.9027 1.8517 -4.6826 C.3 1 LGD 0.3301
29 O2 1.5743 1.8817 -4.0860 O.3 1 LGD -0.3265
30 O3 -3.2591 0.6937 -3.9678 O.3 1 LGD -0.5180
31 N3 -4.3892 -1.1985 -2.1042 N.4 1 LGD -0.6699
32 C26 -5.6298 -1.9418 -1.7854 C.3 1 LGD 0.0945
33 O4 -2.5418 -3.4451 0.8549 O.3 1 LGD -0.5042
34 O5 -2.9318 -2.8433 3.5235 O.3 1 LGD -0.3297
35 C27 -4.3160 -0.4659 4.3870 C.3 1 LGD -0.0671
36 C28 -1.5723 -2.7141 3.9714 C.3 1 LGD 0.1242
37 C29 -0.7074 2.6099 -1.7900 C.3 1 LGD 0.1329
38 S1 -0.6944 -0.3817 0.7122 S.3 1 LGD -0.4147
39 O6 -0.2767 2.3749 -0.4346 O.3 1 LGD -0.4808
40 C30 1.0600 2.2554 -0.1503 C.2 1 LGD 0.6156
41 O7 1.9535 2.6421 -0.8862 O.2 1 LGD -0.3944
42 C31 4.0250 -2.0414 -2.8811 C.3 1 LGD -0.0612
43 C32 1.0669 0.0465 1.0984 C.3 1 LGD 0.0077
44 O8 1.7342 -2.8167 -1.2264 O.3 1 LGD -0.3712
45 C33 2.5266 -3.0676 -0.1440 C.2 1 LGD 0.6476
46 C34 3.8465 1.2466 1.0799 C.ar 1 LGD -0.1210
47 C35 5.1683 1.5200 1.4900 C.ar 1 LGD 0.0857
48 C36 5.3926 2.4259 2.5391 C.ar 1 LGD 0.1938
49 C37 4.3114 3.0636 3.1614 C.ar 1 LGD -0.1137
50 O9 6.2638 0.9312 0.8826 O.3 1 LGD -0.3421
51 C38 6.1524 -0.0126 -0.1970 C.3 1 LGD 0.1382
52 O10 6.6663 2.6975 2.9486 O.3 1 LGD -0.4485
53 C39 2.2946 -4.4724 0.4001 C.3 1 LGD -0.1416
54 O11 3.3161 -2.2740 0.3379 O.2 1 LGD -0.5150
55 H1 1.6633 3.0738 4.4161 H 1 LGD 0.1042
56 H2 2.1092 4.5797 3.6189 H 1 LGD 0.1042
57 H3 -0.2856 3.8420 3.2006 H 1 LGD 0.1128
58 H4 0.6516 4.0896 1.7084 H 1 LGD 0.1128
59 H5 -0.6053 1.9829 1.8119 H 1 LGD 0.4545
60 H6 -5.4323 0.5634 -2.5885 H 1 LGD 0.1633
61 H7 -3.4443 2.0512 -2.4500 H 1 LGD 0.1667
62 H8 -1.7704 -1.3068 -2.7978 H 1 LGD 0.1177
63 H9 -3.1310 -2.7234 -1.4099 H 1 LGD 0.1607
64 H10 -5.9424 0.7556 -0.3732 H 1 LGD 0.1076
65 H11 -4.4996 1.7456 -0.3589 H 1 LGD 0.1076
66 H12 -5.0535 0.9776 2.1880 H 1 LGD 0.1706
67 H13 -0.6230 -2.3356 -0.7708 H 1 LGD 0.1532
68 H14 -1.1558 1.4475 -3.5371 H 1 LGD 0.1443
69 H15 3.4875 2.7106 -4.3332 H 1 LGD 0.1153
70 H16 2.8258 1.8482 -5.7760 H 1 LGD 0.1153
71 H17 -2.8964 -0.2017 -4.0756 H 1 LGD 0.4224
72 H18 -5.9195 -1.7562 -0.7495 H 1 LGD 0.1232
73 H19 -6.4337 -1.6155 -2.4478 H 1 LGD 0.1232
74 H20 -5.4613 -3.0114 -1.9237 H 1 LGD 0.1232
75 H21 -2.3959 -3.9524 1.6734 H 1 LGD 0.4810
76 H22 -4.6875 -1.3419 4.9334 H 1 LGD 0.0786
77 H23 -3.3934 -0.1293 4.8758 H 1 LGD 0.0786
78 H24 -5.0627 0.3303 4.4977 H 1 LGD 0.0786
79 H25 -1.4100 -1.7206 4.4077 H 1 LGD 0.0508
80 H26 -1.3552 -3.4729 4.7332 H 1 LGD 0.0508
81 H27 -0.8787 -2.8482 3.1318 H 1 LGD 0.0508
82 H28 0.0181 3.2261 -2.3359 H 1 LGD 0.1183
83 H29 -1.6611 3.1511 -1.7818 H 1 LGD 0.1183
84 H30 3.7894 -3.1125 -2.9104 H 1 LGD 0.0818
85 H31 4.5489 -1.8000 -3.8142 H 1 LGD 0.0818
86 H32 4.7243 -1.8726 -2.0540 H 1 LGD 0.0818
87 H33 1.7240 -0.3607 0.3307 H 1 LGD 0.1327
88 H34 1.3308 -0.4375 2.0470 H 1 LGD 0.1327
89 H35 3.6683 0.5646 0.2558 H 1 LGD 0.1417
90 H36 4.4988 3.7694 3.9662 H 1 LGD 0.1872
91 H37 5.5981 -0.9003 0.1309 H 1 LGD 0.0553
92 H38 5.6345 0.4419 -1.0512 H 1 LGD 0.0553
93 H39 7.1517 -0.3270 -0.5219 H 1 LGD 0.0553
94 H40 7.2726 2.1701 2.3985 H 1 LGD 0.4684
95 H41 2.9470 -4.6608 1.2619 H 1 LGD 0.0934
96 H42 1.2487 -4.5830 0.7124 H 1 LGD 0.0934
97 H43 2.5072 -5.2150 -0.3788 H 1 LGD 0.0934
98 H44 0.3642 1.4915 3.0435 H 1 LGD 0.4545
99 H45 -2.1360 0.8617 -0.9105 H 1 LGD 0.4797
100 H46 -4.1643 -1.3998 -3.0683 H 1 LGD 0.4448
@BOND
1 1 2 1
2 2 3 ar
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 1
11 11 12 1
12 12 13 ar
13 13 14 1
14 7 14 1
15 13 15 ar
16 15 16 ar
17 16 17 ar
18 17 18 ar
19 12 18 ar
20 10 19 1
21 19 20 1
22 20 21 ar
23 21 22 1
24 9 22 1
25 20 23 ar
26 23 24 ar
27 24 25 ar
28 25 26 ar
29 21 26 ar
30 25 27 1
31 27 28 1
32 28 29 1
33 26 29 1
34 8 30 1
35 7 31 1
36 11 31 1
37 31 32 1
38 18 33 1
39 17 34 1
40 16 35 1
41 34 36 1
42 22 37 1
43 19 38 1
44 37 39 1
45 39 40 1
46 40 41 2
47 24 42 1
48 1 40 1
49 1 43 1
50 38 43 1
51 23 44 1
52 44 45 1
53 2 46 ar
54 46 47 ar
55 47 48 ar
56 48 49 ar
57 3 49 ar
58 47 50 1
59 50 51 1
60 48 52 1
61 45 53 1
62 45 54 2
63 4 55 1
64 4 56 1
65 5 57 1
66 5 58 1
67 6 59 1
68 7 60 1
69 8 61 1
70 10 62 1
71 11 63 1
72 14 64 1
73 14 65 1
74 15 66 1
75 19 67 1
76 22 68 1
77 28 69 1
78 28 70 1
79 30 71 1
80 32 72 1
81 32 73 1
82 32 74 1
83 33 75 1
84 35 76 1
85 35 77 1
86 35 78 1
87 36 79 1
88 36 80 1
89 36 81 1
90 37 82 1
91 37 83 1
92 42 84 1
93 42 85 1
94 42 86 1
95 43 87 1
96 43 88 1
97 46 89 1
98 49 90 1
99 51 91 1
100 51 92 1
101 51 93 1
102 52 94 1
103 53 95 1
104 53 96 1
105 53 97 1
106 6 98 1
107 9 99 1
108 31 100 1