@COMMENT
LIGANDBOX_ID = D06199-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06199
NAME = Trabectedin_(JAN/USAN/INN)_Yondelis_(TN)
MOLECULAR_FORMULA = C39H43N3O11S
MOLECULAR_WEIGHT = 761.848
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 4
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 7
TPSA = 168.7200
HOMO = -15.1091
LUMO = -9.4642
mLOGS = -0.709
mLOGPA = -4.375
mLOGD = 0.029
@MOLECULE
D06199-05
100 108 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.2648 1.5988 1.2880 C.3 1 LGD 0.1864
2 C2 2.7049 1.9067 1.7657 C.ar 1 LGD -0.1866
3 C3 2.9481 2.8425 2.7990 C.ar 1 LGD -0.0709
4 C4 1.7973 3.5669 3.4843 C.3 1 LGD -0.0595
5 C5 0.5026 3.4958 2.6590 C.3 1 LGD 0.1082
6 N1 0.2757 2.0872 2.2831 N.4 1 LGD -0.7399
7 C6 -4.6164 0.1219 -1.9640 C.3 1 LGD 0.0886
8 C7 -3.3763 0.8932 -2.4998 C.3 1 LGD 0.3224
9 N2 -2.1230 0.4971 -1.7986 N.4 1 LGD -0.7178
10 C8 -1.9558 -0.9813 -1.7033 C.3 1 LGD 0.1336
11 C9 -3.2344 -1.7170 -1.1593 C.3 1 LGD 0.1926
12 C10 -3.5934 -1.3989 0.2883 C.ar 1 LGD -0.2487
13 C11 -4.3642 -0.2570 0.5898 C.ar 1 LGD -0.0932
14 C12 -4.9816 0.5889 -0.5256 C.3 1 LGD -0.0696
15 C13 -4.6507 0.0554 1.9295 C.ar 1 LGD -0.1289
16 C14 -4.1884 -0.7636 2.9751 C.ar 1 LGD 0.0148
17 C15 -3.4543 -1.9256 2.6675 C.ar 1 LGD 0.0467
18 C16 -3.1817 -2.2578 1.3272 C.ar 1 LGD 0.1869
19 C17 -0.6747 -1.2658 -0.8696 C.3 1 LGD 0.1359
20 C18 0.4907 -0.8124 -1.7245 C.ar 1 LGD -0.1772
21 C19 0.3452 0.3910 -2.4502 C.ar 1 LGD -0.1475
22 C20 -0.9556 1.2153 -2.4200 C.3 1 LGD 0.1682
23 C21 1.6713 -1.5970 -1.8441 C.ar 1 LGD 0.1492
24 C22 2.7409 -1.1721 -2.6708 C.ar 1 LGD -0.0295
25 C23 2.5732 0.0456 -3.3443 C.ar 1 LGD 0.1174
26 C24 1.4239 0.7828 -3.2505 C.ar 1 LGD 0.1005
27 O1 3.4538 0.6456 -4.1929 O.3 1 LGD -0.2794
28 C25 2.8185 1.8715 -4.6563 C.3 1 LGD 0.3301
29 O2 1.5001 1.8914 -4.0371 O.3 1 LGD -0.3266
30 O3 -3.2750 0.7238 -3.9134 O.3 1 LGD -0.5197
31 N3 -4.4243 -1.3549 -1.9549 N.4 1 LGD -0.6767
32 C26 -4.3934 -1.9860 -3.2929 C.3 1 LGD 0.0831
33 O4 -2.5053 -3.4103 1.0376 O.3 1 LGD -0.5045
34 O5 -3.0033 -2.7399 3.6827 O.3 1 LGD -0.3283
35 C27 -4.4963 -0.3986 4.4233 C.3 1 LGD -0.0664
36 C28 -1.6249 -2.6610 4.0830 C.3 1 LGD 0.1238
37 C29 -0.7789 2.5923 -1.7158 C.3 1 LGD 0.1345
38 S1 -0.7123 -0.3853 0.7844 S.3 1 LGD -0.4135
39 O6 -0.3350 2.3687 -0.3635 O.3 1 LGD -0.4801
40 C30 1.0050 2.2639 -0.0882 C.2 1 LGD 0.6157
41 O7 1.8898 2.6558 -0.8317 O.2 1 LGD -0.3947
42 C31 4.0058 -2.0065 -2.8568 C.3 1 LGD -0.0612
43 C32 1.0423 0.0612 1.1714 C.3 1 LGD 0.0076
44 O8 1.7384 -2.8074 -1.1877 O.3 1 LGD -0.3714
45 C33 2.5160 -3.0565 -0.0952 C.2 1 LGD 0.6475
46 C34 3.8061 1.2821 1.1374 C.ar 1 LGD -0.1215
47 C35 5.1268 1.5602 1.5467 C.ar 1 LGD 0.0854
48 C36 5.3483 2.4695 2.5936 C.ar 1 LGD 0.1937
49 C37 4.2650 3.1071 3.2130 C.ar 1 LGD -0.1137
50 O9 6.2232 0.9711 0.9412 O.3 1 LGD -0.3420
51 C38 6.1121 0.0264 -0.1381 C.3 1 LGD 0.1382
52 O10 6.6209 2.7440 3.0042 O.3 1 LGD -0.4485
53 C39 2.2741 -4.4604 0.4470 C.3 1 LGD -0.1419
54 O11 3.2992 -2.2622 0.3957 O.2 1 LGD -0.5143
55 H1 1.6200 3.1180 4.4698 H 1 LGD 0.1042
56 H2 2.0538 4.6196 3.6579 H 1 LGD 0.1042
57 H3 -0.3376 3.8610 3.2528 H 1 LGD 0.1129
58 H4 0.5941 4.1036 1.7566 H 1 LGD 0.1129
59 H5 -0.6470 1.9881 1.8807 H 1 LGD 0.4547
60 H6 -5.4603 0.3577 -2.6156 H 1 LGD 0.1632
61 H7 -3.5403 1.9587 -2.3246 H 1 LGD 0.1614
62 H8 -1.7797 -1.3542 -2.7133 H 1 LGD 0.1187
63 H9 -3.0764 -2.7932 -1.2540 H 1 LGD 0.1599
64 H10 -6.0733 0.5392 -0.4270 H 1 LGD 0.1104
65 H11 -4.7168 1.6457 -0.3932 H 1 LGD 0.1104
66 H12 -5.2483 0.9339 2.1576 H 1 LGD 0.1722
67 H13 -0.6046 -2.3444 -0.6855 H 1 LGD 0.1513
68 H14 -1.2037 1.4268 -3.4605 H 1 LGD 0.1436
69 H15 3.3993 2.7403 -4.3253 H 1 LGD 0.1152
70 H16 2.7226 1.8569 -5.7482 H 1 LGD 0.1152
71 H17 -2.8698 -0.1446 -4.0739 H 1 LGD 0.4269
72 H18 -3.5139 -1.6588 -3.8469 H 1 LGD 0.1138
73 H19 -4.3523 -3.0712 -3.1800 H 1 LGD 0.1138
74 H20 -5.2948 -1.7180 -3.8471 H 1 LGD 0.1138
75 H21 -2.3805 -3.8962 1.8723 H 1 LGD 0.4800
76 H22 -4.9150 -1.2556 4.9660 H 1 LGD 0.0790
77 H23 -3.5862 -0.0803 4.9468 H 1 LGD 0.0790
78 H24 -5.2236 0.4201 4.4899 H 1 LGD 0.0790
79 H25 -1.3955 -1.6529 4.4503 H 1 LGD 0.0508
80 H26 -1.4275 -3.3815 4.8863 H 1 LGD 0.0508
81 H27 -0.9638 -2.8872 3.2372 H 1 LGD 0.0508
82 H28 -0.0683 3.2213 -2.2670 H 1 LGD 0.1185
83 H29 -1.7430 3.1149 -1.7030 H 1 LGD 0.1185
84 H30 3.7720 -3.0768 -2.9158 H 1 LGD 0.0818
85 H31 4.5339 -1.7394 -3.7805 H 1 LGD 0.0818
86 H32 4.7003 -1.8586 -2.0216 H 1 LGD 0.0818
87 H33 1.7028 -0.3463 0.4065 H 1 LGD 0.1327
88 H34 1.3090 -0.4141 2.1236 H 1 LGD 0.1327
89 H35 3.6299 0.5967 0.3158 H 1 LGD 0.1414
90 H36 4.4500 3.8159 4.0157 H 1 LGD 0.1872
91 H37 5.5571 -0.8608 0.1898 H 1 LGD 0.0553
92 H38 5.5946 0.4806 -0.9927 H 1 LGD 0.0553
93 H39 7.1113 -0.2887 -0.4624 H 1 LGD 0.0553
94 H40 7.2285 2.2134 2.4585 H 1 LGD 0.4683
95 H41 2.9179 -4.6517 1.3145 H 1 LGD 0.0931
96 H42 1.2249 -4.5663 0.7500 H 1 LGD 0.0931
97 H43 2.4895 -5.2040 -0.3302 H 1 LGD 0.0931
98 H44 0.3314 1.5133 3.1122 H 1 LGD 0.4547
99 H45 -2.1879 0.8169 -0.8405 H 1 LGD 0.4786
100 H46 -5.2209 -1.7469 -1.4694 H 1 LGD 0.4914
@BOND
1 1 2 1
2 2 3 ar
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 7 8 1
8 8 9 1
9 9 10 1
10 10 11 1
11 11 12 1
12 12 13 ar
13 13 14 1
14 7 14 1
15 13 15 ar
16 15 16 ar
17 16 17 ar
18 17 18 ar
19 12 18 ar
20 10 19 1
21 19 20 1
22 20 21 ar
23 21 22 1
24 9 22 1
25 20 23 ar
26 23 24 ar
27 24 25 ar
28 25 26 ar
29 21 26 ar
30 25 27 1
31 27 28 1
32 28 29 1
33 26 29 1
34 8 30 1
35 7 31 1
36 11 31 1
37 31 32 1
38 18 33 1
39 17 34 1
40 16 35 1
41 34 36 1
42 22 37 1
43 19 38 1
44 37 39 1
45 39 40 1
46 40 41 2
47 24 42 1
48 1 40 1
49 1 43 1
50 38 43 1
51 23 44 1
52 44 45 1
53 2 46 ar
54 46 47 ar
55 47 48 ar
56 48 49 ar
57 3 49 ar
58 47 50 1
59 50 51 1
60 48 52 1
61 45 53 1
62 45 54 2
63 4 55 1
64 4 56 1
65 5 57 1
66 5 58 1
67 6 59 1
68 7 60 1
69 8 61 1
70 10 62 1
71 11 63 1
72 14 64 1
73 14 65 1
74 15 66 1
75 19 67 1
76 22 68 1
77 28 69 1
78 28 70 1
79 30 71 1
80 32 72 1
81 32 73 1
82 32 74 1
83 33 75 1
84 35 76 1
85 35 77 1
86 35 78 1
87 36 79 1
88 36 80 1
89 36 81 1
90 37 82 1
91 37 83 1
92 42 84 1
93 42 85 1
94 42 86 1
95 43 87 1
96 43 88 1
97 46 89 1
98 49 90 1
99 51 91 1
100 51 92 1
101 51 93 1
102 52 94 1
103 53 95 1
104 53 96 1
105 53 97 1
106 6 98 1
107 9 99 1
108 31 100 1