@COMMENT
LIGANDBOX_ID = D06386-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06386
NAME = Zorubicin_hydrochloride_(USAN)
MOLECULAR_FORMULA = C34H35N3O10
MOLECULAR_WEIGHT = 645.665
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 210.2300
HOMO = -10.8120
LUMO = -3.7109
mLOGPA = -6.794
mLOGD = 1.519
mLOGS = -1.432
@MOLECULE
D06386-03
83 88 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.9868 -0.8299 2.8983 C.3 1 LGD 0.3649
2 O1 0.1683 -1.5710 3.3929 O.3 1 LGD -0.4355
3 C2 0.2297 -3.0240 3.2850 C.3 1 LGD 0.1274
4 C3 -1.0520 -3.6410 3.8933 C.3 1 LGD 0.0927
5 C4 -2.3042 -3.0233 3.2234 C.3 1 LGD 0.0806
6 C5 -2.3071 -1.4854 3.3810 C.3 1 LGD -0.1281
7 C6 -5.8138 6.2306 -2.4789 C.ar 1 LGD -0.1939
8 C7 -5.4203 6.0129 -3.8040 C.ar 1 LGD -0.0722
9 C8 -4.5942 4.9293 -4.1184 C.ar 1 LGD -0.1160
10 C9 -4.1588 4.0471 -3.1106 C.ar 1 LGD -0.1012
11 C10 -4.5717 4.2384 -1.7754 C.ar 1 LGD -0.1601
12 C11 -5.3950 5.3509 -1.4559 C.ar 1 LGD 0.2010
13 C12 -3.2515 2.9090 -3.4700 C.2 1 LGD 0.6028
14 C13 -2.4609 2.2653 -2.3533 C.ar 1 LGD -0.1788
15 C14 -2.9004 2.4091 -1.0184 C.ar 1 LGD -0.1929
16 C15 -4.1367 3.2388 -0.7278 C.2 1 LGD 0.6133
17 C16 -1.2763 1.5392 -2.6253 C.ar 1 LGD 0.1563
18 C17 -0.5408 0.9329 -1.5844 C.ar 1 LGD -0.0321
19 C18 -1.0019 1.0378 -0.2488 C.ar 1 LGD -0.1015
20 C19 -2.1723 1.7809 0.0248 C.ar 1 LGD 0.1618
21 C20 0.7762 0.2080 -1.9181 C.3 1 LGD -0.0498
22 C21 1.2047 -0.8205 -0.8492 C.3 1 LGD 0.1540
23 C22 1.1837 -0.0987 0.5311 C.3 1 LGD -0.1319
24 C23 -0.2278 0.3951 0.9200 C.3 1 LGD 0.2062
25 O2 -5.7577 5.5770 -0.1396 O.3 1 LGD -0.3360
26 C24 -6.5535 6.6985 0.2839 C.3 1 LGD 0.1364
27 O3 -4.7824 3.0707 0.2940 O.2 1 LGD -0.5290
28 O4 -3.1718 2.5211 -4.6247 O.2 1 LGD -0.5226
29 O5 -0.8114 1.4450 -3.9094 O.3 1 LGD -0.4994
30 O6 -2.5813 1.9145 1.3243 O.3 1 LGD -0.5304
31 O7 -0.9865 -0.7241 1.4545 O.3 1 LGD -0.4601
32 C25 2.5958 -1.4004 -1.1733 C.2 1 LGD 0.3245
33 N1 3.6475 -1.0525 -0.5095 N.2 1 LGD -0.4169
34 C26 2.6419 -2.4350 -2.3020 C.3 1 LGD -0.1677
35 N2 4.8700 -1.5986 -0.7613 N.am 1 LGD -0.3503
36 C27 6.0021 -1.2509 -0.0354 C.2 1 LGD 0.6979
37 C28 7.3235 -1.8958 -0.3762 C.ar 1 LGD -0.1463
38 O8 5.9090 -0.4315 0.8652 O.2 1 LGD -0.5488
39 C29 8.4739 -1.5874 0.3810 C.ar 1 LGD -0.0867
40 C30 9.7103 -2.1776 0.0739 C.ar 1 LGD -0.1354
41 C31 9.8126 -3.0822 -0.9929 C.ar 1 LGD -0.0971
42 C32 8.6764 -3.3971 -1.7525 C.ar 1 LGD -0.1354
43 C33 7.4380 -2.8092 -1.4480 C.ar 1 LGD -0.0867
44 N3 -3.5223 -3.5880 3.8310 N.4 1 LGD -0.8137
45 O9 -1.0771 -3.4159 5.3045 O.3 1 LGD -0.6083
46 C34 0.4840 -3.4882 1.8342 C.3 1 LGD -0.1221
47 O10 0.2383 -1.8721 -0.8440 O.3 1 LGD -0.6101
48 H1 -0.9549 0.1827 3.3181 H 1 LGD 0.1139
49 H2 1.0856 -3.3725 3.8776 H 1 LGD 0.1145
50 H3 -1.0478 -4.7218 3.7015 H 1 LGD 0.0909
51 H4 -2.2966 -3.2670 2.1591 H 1 LGD 0.1280
52 H5 -3.1507 -1.0579 2.8244 H 1 LGD 0.0818
53 H6 -2.4651 -1.2203 4.4343 H 1 LGD 0.0818
54 H7 -6.4438 7.0880 -2.2646 H 1 LGD 0.1509
55 H8 -5.7475 6.6912 -4.5872 H 1 LGD 0.1520
56 H9 -4.2851 4.7826 -5.1498 H 1 LGD 0.1609
57 H10 0.7009 -0.3066 -2.8841 H 1 LGD 0.0835
58 H11 1.5717 0.9556 -2.0345 H 1 LGD 0.0835
59 H12 1.5898 -0.7426 1.3189 H 1 LGD 0.0858
60 H13 1.8492 0.7738 0.4885 H 1 LGD 0.0858
61 H14 -0.1030 1.1622 1.6955 H 1 LGD 0.0740
62 H15 -7.5387 6.6711 -0.1983 H 1 LGD 0.0488
63 H16 -6.6960 6.6647 1.3709 H 1 LGD 0.0488
64 H17 -6.0523 7.6405 0.0273 H 1 LGD 0.0488
65 H18 -1.4868 1.8277 -4.5011 H 1 LGD 0.4638
66 H19 -3.4296 2.3980 1.3199 H 1 LGD 0.4665
67 H20 1.7168 -2.4582 -2.8907 H 1 LGD 0.0533
68 H21 3.4541 -2.2173 -3.0068 H 1 LGD 0.0533
69 H22 2.7997 -3.4427 -1.8972 H 1 LGD 0.0533
70 H23 4.9567 -2.2881 -1.4924 H 1 LGD 0.3026
71 H24 8.4144 -0.8889 1.2112 H 1 LGD 0.1398
72 H25 10.5891 -1.9325 0.6635 H 1 LGD 0.1428
73 H26 10.7698 -3.5376 -1.2306 H 1 LGD 0.1421
74 H27 8.7549 -4.0973 -2.5794 H 1 LGD 0.1428
75 H28 6.5758 -3.0701 -2.0540 H 1 LGD 0.1398
76 H29 -3.5522 -4.5848 3.6702 H 1 LGD 0.4595
77 H30 -3.5001 -3.4173 4.8271 H 1 LGD 0.4595
78 H31 -0.4804 -2.6669 5.4842 H 1 LGD 0.4502
79 H32 1.3711 -3.0004 1.4148 H 1 LGD 0.0633
80 H33 0.6687 -4.5694 1.8122 H 1 LGD 0.0633
81 H34 -0.3800 -3.2931 1.1909 H 1 LGD 0.0633
82 H35 -0.4838 -1.5801 -0.2568 H 1 LGD 0.4248
83 H36 -4.3412 -3.1551 3.4285 H 1 LGD 0.4595
@BOND
1 1 2 1
2 2 3 1
3 3 4 1
4 4 5 1
5 5 6 1
6 1 6 1
7 7 8 ar
8 8 9 ar
9 9 10 ar
10 10 11 ar
11 11 12 ar
12 7 12 ar
13 10 13 1
14 13 14 1
15 14 15 ar
16 15 16 1
17 11 16 1
18 14 17 ar
19 17 18 ar
20 18 19 ar
21 19 20 ar
22 15 20 ar
23 18 21 1
24 21 22 1
25 22 23 1
26 23 24 1
27 19 24 1
28 12 25 1
29 25 26 1
30 16 27 2
31 13 28 2
32 17 29 1
33 20 30 1
34 24 31 1
35 22 32 1
36 32 33 2
37 32 34 1
38 33 35 1
39 35 36 am
40 36 37 1
41 36 38 2
42 37 39 ar
43 39 40 ar
44 40 41 ar
45 41 42 ar
46 42 43 ar
47 37 43 ar
48 1 31 1
49 5 44 1
50 4 45 1
51 3 46 1
52 22 47 1
53 1 48 1
54 3 49 1
55 4 50 1
56 5 51 1
57 6 52 1
58 6 53 1
59 7 54 1
60 8 55 1
61 9 56 1
62 21 57 1
63 21 58 1
64 23 59 1
65 23 60 1
66 24 61 1
67 26 62 1
68 26 63 1
69 26 64 1
70 29 65 1
71 30 66 1
72 34 67 1
73 34 68 1
74 34 69 1
75 35 70 1
76 39 71 1
77 40 72 1
78 41 73 1
79 42 74 1
80 43 75 1
81 44 76 1
82 44 77 1
83 45 78 1
84 46 79 1
85 46 80 1
86 46 81 1
87 47 82 1
88 44 83 1