@COMMENT
LIGANDBOX_ID = D06884-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06884
NAME = Lymecycline_(INN)
MOLECULAR_FORMULA = C29H38N4O10
MOLECULAR_WEIGHT = 602.641
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 10
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 242.9800
HOMO = -12.3982
LUMO = -7.9708
mLOGS = 2.050
mLOGD = -3.018
mLOGPA = -5.590
@MOLECULE
D06884-01
83 86 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 18.6280 -23.3360 -0.4620 C.ar 1 LGD -0.0498
2 C2 19.4570 -22.9880 0.6080 C.ar 1 LGD -0.1544
3 C3 20.3990 -23.9020 1.1020 C.ar 1 LGD 0.2077
4 C4 20.5360 -25.1860 0.5100 C.ar 1 LGD -0.2757
5 C5 19.7170 -25.5210 -0.6000 C.ar 1 LGD -0.0720
6 C6 18.7530 -24.5960 -1.0600 C.ar 1 LGD -0.1632
7 C7 21.5140 -26.2120 1.0620 C.2 1 LGD 0.5588
8 C8 21.9100 -27.3750 0.1800 C.2 1 LGD -0.2430
9 C9 21.3800 -27.2820 -1.2670 C.3 1 LGD -0.0205
10 C10 19.8700 -26.8900 -1.2800 C.3 1 LGD 0.2207
11 C11 22.7220 -28.3940 0.6080 C.2 1 LGD 0.0799
12 C12 23.1000 -29.5800 -0.2980 C.3 1 LGD 0.0569
13 C13 23.1150 -29.0710 -1.7640 C.3 1 LGD -0.0716
14 C14 21.7210 -28.5280 -2.1440 C.3 1 LGD -0.0734
15 C15 24.4540 -30.2550 0.0700 C.2 1 LGD 0.5216
16 C16 25.5780 -30.2120 -0.9420 C.2 1 LGD -0.2478
17 C17 25.2430 -30.1730 -2.2680 C.2 1 LGD 0.1180
18 C18 23.7920 -30.0790 -2.7380 C.3 1 LGD 0.1322
19 O1 21.1790 -23.5100 2.1540 O.3 1 LGD -0.4787
20 O2 21.9400 -26.0960 2.1980 O.2 1 LGD -0.4496
21 O3 23.2320 -28.4630 1.8530 O.3 1 LGD -0.4037
22 O4 24.5990 -30.7720 1.1680 O.2 1 LGD -0.4047
23 O5 26.1220 -30.1570 -3.2860 O.3 1 LGD -0.4794
24 C19 27.0140 -30.3250 -0.4660 C.2 1 LGD 0.6837
25 N1 28.0730 -30.3480 -1.3680 N.am 1 LGD -0.6219
26 O6 27.2850 -30.3810 0.7230 O.2 1 LGD -0.5318
27 C20 29.4830 -30.4240 -0.9580 C.3 1 LGD 0.3127
28 N2 29.8490 -29.2390 -0.1680 N.4 1 LGD -0.7702
29 C21 29.8420 -27.9440 -0.8700 C.3 1 LGD 0.0878
30 C22 29.7840 -26.7890 0.1600 C.3 1 LGD -0.1146
31 C23 28.4590 -26.7450 0.9730 C.3 1 LGD -0.0797
32 C24 27.2510 -26.2360 0.1380 C.3 1 LGD -0.0867
33 C25 25.8910 -26.3640 0.8800 C.3 1 LGD -0.0210
34 N3 24.8250 -25.9050 -0.0250 N.4 1 LGD -0.7951
35 C26 25.8180 -25.5600 2.1940 C.2 1 LGD 0.8471
36 O7 26.5120 -24.5910 2.4460 O.co2 1 LGD -0.7265
37 O8 24.9130 -26.0360 3.0810 O.co2 1 LGD -0.7265
38 C27 18.9720 -27.9260 -0.5460 C.3 1 LGD -0.0764
39 O9 19.4400 -26.8160 -2.6420 O.3 1 LGD -0.5896
40 N4 23.1080 -31.4120 -2.8280 N.4 1 LGD -0.6771
41 C28 21.9840 -31.4480 -3.7900 C.3 1 LGD 0.0769
42 C29 23.9960 -32.5780 -3.0450 C.3 1 LGD 0.0769
43 O10 22.0940 -30.5860 -0.1270 O.3 1 LGD -0.5983
44 H1 17.8900 -22.6300 -0.8300 H 1 LGD 0.1614
45 H2 19.3610 -22.0070 1.0670 H 1 LGD 0.1749
46 H3 18.0920 -24.8440 -1.8850 H 1 LGD 0.1547
47 H4 21.9210 -26.4470 -1.7320 H 1 LGD 0.0391
48 H5 23.7760 -28.1920 -1.7840 H 1 LGD 0.0720
49 H6 21.7070 -28.2490 -3.2060 H 1 LGD 0.0745
50 H7 20.9600 -29.3020 -2.0070 H 1 LGD 0.0745
51 H8 23.7920 -29.6210 -3.7360 H 1 LGD 0.1186
52 H9 21.7060 -24.2810 2.4430 H 1 LGD 0.4646
53 H10 23.6920 -29.3200 1.9440 H 1 LGD 0.4418
54 H11 25.6220 -30.2170 -4.1190 H 1 LGD 0.4654
55 H12 27.8570 -30.3010 -2.3540 H 1 LGD 0.3520
56 H13 29.6270 -31.3200 -0.3440 H 1 LGD 0.1251
57 H14 30.1220 -30.4810 -1.8470 H 1 LGD 0.1251
58 H15 29.2020 -29.1890 0.6080 H 1 LGD 0.4722
59 H16 30.7490 -27.8580 -1.4810 H 1 LGD 0.0982
60 H17 28.9770 -27.8760 -1.5400 H 1 LGD 0.0982
61 H18 30.6290 -26.8870 0.8550 H 1 LGD 0.0961
62 H19 29.9220 -25.8330 -0.3600 H 1 LGD 0.0961
63 H20 28.2340 -27.7350 1.3880 H 1 LGD 0.0847
64 H21 28.6090 -26.0810 1.8330 H 1 LGD 0.0847
65 H22 27.4230 -25.1900 -0.1480 H 1 LGD 0.0310
66 H23 27.1860 -26.8100 -0.7950 H 1 LGD 0.0310
67 H24 25.7240 -27.4210 1.1220 H 1 LGD 0.0866
68 H25 25.0230 -24.9560 -0.3090 H 1 LGD 0.4394
69 H26 23.9330 -26.0240 0.4360 H 1 LGD 0.4394
70 H27 18.9970 -28.9080 -1.0340 H 1 LGD 0.0585
71 H28 19.2820 -28.0590 0.4980 H 1 LGD 0.0585
72 H29 17.9280 -27.5880 -0.5380 H 1 LGD 0.0585
73 H30 19.8580 -26.0320 -3.0390 H 1 LGD 0.4127
74 H31 22.3540 -31.3180 -4.8150 H 1 LGD 0.1127
75 H32 21.4640 -32.4130 -3.7300 H 1 LGD 0.1127
76 H33 21.2490 -30.6650 -3.5880 H 1 LGD 0.1127
77 H34 24.7120 -32.6830 -2.2210 H 1 LGD 0.1127
78 H35 23.4070 -33.5030 -3.0880 H 1 LGD 0.1127
79 H36 24.5480 -32.4730 -3.9880 H 1 LGD 0.1127
80 H37 22.2410 -30.9960 0.7440 H 1 LGD 0.4645
81 H38 30.7954 -29.3333 0.1410 H 1 LGD 0.4722
82 H39 24.8712 -26.4298 -0.8750 H 1 LGD 0.4394
83 H40 22.4646 -31.4998 -2.0676 H 1 LGD 0.4802
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 2
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 1
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 3 19 1
23 7 20 2
24 11 21 1
25 15 22 2
26 17 23 1
27 16 24 1
28 24 25 am
29 24 26 2
30 25 27 1
31 27 28 1
32 28 29 1
33 29 30 1
34 30 31 1
35 31 32 1
36 32 33 1
37 33 34 1
38 33 35 1
39 35 36 2
40 35 37 1
41 10 38 1
42 10 39 1
43 18 40 1
44 40 41 1
45 40 42 1
46 12 43 1
47 1 44 1
48 2 45 1
49 6 46 1
50 9 47 1
51 13 48 1
52 14 49 1
53 14 50 1
54 18 51 1
55 19 52 1
56 21 53 1
57 23 54 1
58 25 55 1
59 27 56 1
60 27 57 1
61 28 58 1
62 29 59 1
63 29 60 1
64 30 61 1
65 30 62 1
66 31 63 1
67 31 64 1
68 32 65 1
69 32 66 1
70 33 67 1
71 34 68 1
72 34 69 1
73 38 70 1
74 38 71 1
75 38 72 1
76 39 73 1
77 41 74 1
78 41 75 1
79 41 76 1
80 42 77 1
81 42 78 1
82 42 79 1
83 43 80 1
84 28 81 1
85 34 82 1
86 40 83 1