@COMMENT
LIGANDBOX_ID = D06884-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06884
NAME = Lymecycline_(INN)
MOLECULAR_FORMULA = C29H38N4O10
MOLECULAR_WEIGHT = 602.641
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 10
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 242.9800
HOMO = -12.3982
LUMO = -7.9708
mLOGS = 2.050
mLOGD = -3.018
mLOGPA = -5.590
@MOLECULE
D06884-02
83 86 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -5.4538 4.7013 0.3001 C.ar 1 LGD -0.0478
2 C2 -4.6366 5.0320 1.3818 C.ar 1 LGD -0.1522
3 C3 -3.7008 4.1097 1.8656 C.ar 1 LGD 0.2136
4 C4 -3.5617 2.8319 1.2568 C.ar 1 LGD -0.2855
5 C5 -4.3759 2.5044 0.1374 C.ar 1 LGD -0.0618
6 C6 -5.3276 3.4512 -0.3152 C.ar 1 LGD -0.1495
7 C7 -2.5775 1.8107 1.7990 C.2 1 LGD 0.5633
8 C8 -2.1771 0.6570 0.9108 C.2 1 LGD -0.2652
9 C9 -2.6893 0.7610 -0.5443 C.3 1 LGD -0.0293
10 C10 -4.2109 1.1307 -0.5561 C.3 1 LGD 0.2268
11 C11 -1.3832 -0.3707 1.3524 C.2 1 LGD 0.0784
12 C12 -0.9643 -1.5418 0.4509 C.3 1 LGD 0.0529
13 C13 -0.9419 -1.0230 -1.0109 C.3 1 LGD -0.0734
14 C14 -2.3314 -0.4903 -1.4052 C.3 1 LGD -0.0806
15 C15 0.4056 -2.1884 0.8215 C.2 1 LGD 0.5250
16 C16 1.5118 -2.1749 -0.2104 C.2 1 LGD -0.2512
17 C17 1.1581 -2.1574 -1.5314 C.2 1 LGD 0.1200
18 C18 -0.2935 -2.0400 -1.9835 C.3 1 LGD 0.1221
19 O1 -2.9295 4.4879 2.9275 O.3 1 LGD -0.4735
20 O2 -2.1339 1.9307 2.9283 O.2 1 LGD -0.4748
21 O3 -0.9433 -0.4662 2.6189 O.3 1 LGD -0.4162
22 O4 0.5740 -2.6700 1.9299 O.2 1 LGD -0.3981
23 O5 2.0203 -2.1718 -2.5607 O.3 1 LGD -0.4770
24 C19 2.9500 -2.2809 0.2501 C.2 1 LGD 0.6876
25 N1 3.9999 -2.3064 -0.6596 N.am 1 LGD -0.6226
26 O6 3.2376 -2.3186 1.4347 O.2 1 LGD -0.5384
27 C20 5.4088 -2.3746 -0.2522 C.3 1 LGD 0.3121
28 N2 5.7280 -1.2344 0.6266 N.4 1 LGD -0.7739
29 C21 5.6951 0.0511 -0.0983 C.3 1 LGD 0.0980
30 C22 5.6431 1.2108 0.9205 C.3 1 LGD -0.1165
31 C23 4.3155 1.2534 1.7241 C.3 1 LGD -0.0809
32 C24 3.0937 1.6384 0.8484 C.3 1 LGD -0.0767
33 C25 1.7460 1.5133 1.6032 C.3 1 LGD -0.0670
34 N3 0.6584 1.9675 0.7139 N.4 1 LGD -0.8025
35 C26 1.7148 2.3267 2.9070 C.2 1 LGD 0.9105
36 O7 1.8187 3.5376 2.8150 O.co2 1 LGD -0.7277
37 O8 1.5630 1.6995 3.9388 O.co2 1 LGD -0.7277
38 C27 -4.7843 1.1110 -2.0089 C.3 1 LGD -0.0809
39 O9 -4.9305 0.1548 0.1974 O.3 1 LGD -0.5790
40 N4 -1.0078 -3.3480 -1.9821 N.4 1 LGD -0.6710
41 C28 -2.0789 -3.3570 -3.0012 C.3 1 LGD 0.0836
42 C29 -0.1406 -4.5138 -2.2661 C.3 1 LGD 0.0836
43 O10 -1.9491 -2.5740 0.6017 O.3 1 LGD -0.6084
44 H1 -6.1860 5.4157 -0.0657 H 1 LGD 0.1626
45 H2 -4.7336 6.0057 1.8541 H 1 LGD 0.1769
46 H3 -5.9866 3.2418 -1.1495 H 1 LGD 0.1484
47 H4 -2.1553 1.6013 -1.0086 H 1 LGD 0.0558
48 H5 -0.2768 -0.1483 -1.0342 H 1 LGD 0.0723
49 H6 -2.3254 -0.2203 -2.4690 H 1 LGD 0.0759
50 H7 -3.0930 -1.2684 -1.2728 H 1 LGD 0.0759
51 H8 -0.3231 -1.6328 -2.9959 H 1 LGD 0.1205
52 H9 -2.4049 3.7146 3.2076 H 1 LGD 0.4610
53 H10 -0.3857 -1.2624 2.6953 H 1 LGD 0.4527
54 H11 1.5105 -2.1424 -3.3895 H 1 LGD 0.4666
55 H12 3.7774 -2.2783 -1.6443 H 1 LGD 0.3538
56 H13 5.5726 -3.3077 0.2915 H 1 LGD 0.1223
57 H14 6.0513 -2.3548 -1.1352 H 1 LGD 0.1223
58 H15 5.0362 -1.2195 1.3651 H 1 LGD 0.4756
59 H16 6.5865 0.1339 -0.7230 H 1 LGD 0.0976
60 H17 4.8127 0.0880 -0.7393 H 1 LGD 0.0976
61 H18 6.4887 1.1221 1.6148 H 1 LGD 0.0953
62 H19 5.7747 2.1622 0.3893 H 1 LGD 0.0953
63 H20 4.1353 0.2855 2.2085 H 1 LGD 0.0860
64 H21 4.4238 1.9875 2.5332 H 1 LGD 0.0860
65 H22 3.2209 2.6671 0.4861 H 1 LGD 0.0286
66 H23 3.0523 0.9931 -0.0377 H 1 LGD 0.0286
67 H24 1.5756 0.4678 1.8659 H 1 LGD 0.0730
68 H25 0.7724 2.9575 0.5404 H 1 LGD 0.4379
69 H26 -0.2302 1.8145 1.1710 H 1 LGD 0.4379
70 H27 -5.8675 1.2817 -2.0137 H 1 LGD 0.0543
71 H28 -4.3078 1.8807 -2.6293 H 1 LGD 0.0543
72 H29 -4.6369 0.1416 -2.4988 H 1 LGD 0.0543
73 H30 -4.5974 0.1959 1.1107 H 1 LGD 0.4200
74 H31 -1.6426 -3.2269 -3.9933 H 1 LGD 0.1098
75 H32 -2.6097 -4.3104 -2.9649 H 1 LGD 0.1098
76 H33 -2.7874 -2.5505 -2.8133 H 1 LGD 0.1098
77 H34 0.6302 -4.5975 -1.4976 H 1 LGD 0.1098
78 H35 -0.7413 -5.4254 -2.2669 H 1 LGD 0.1098
79 H36 0.3323 -4.3931 -3.2424 H 1 LGD 0.1098
80 H37 -2.0822 -2.7178 1.5565 H 1 LGD 0.4796
81 H38 6.6408 -1.3645 1.0402 H 1 LGD 0.4756
82 H39 0.6894 1.4627 -0.1588 H 1 LGD 0.4379
83 H40 -1.4256 -3.4730 -1.0661 H 1 LGD 0.4906
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 2
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 1
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 3 19 1
23 7 20 2
24 11 21 1
25 15 22 2
26 17 23 1
27 16 24 1
28 24 25 am
29 24 26 2
30 25 27 1
31 27 28 1
32 28 29 1
33 29 30 1
34 30 31 1
35 31 32 1
36 32 33 1
37 33 34 1
38 33 35 1
39 35 36 2
40 35 37 1
41 10 38 1
42 10 39 1
43 18 40 1
44 40 41 1
45 40 42 1
46 12 43 1
47 1 44 1
48 2 45 1
49 6 46 1
50 9 47 1
51 13 48 1
52 14 49 1
53 14 50 1
54 18 51 1
55 19 52 1
56 21 53 1
57 23 54 1
58 25 55 1
59 27 56 1
60 27 57 1
61 28 58 1
62 29 59 1
63 29 60 1
64 30 61 1
65 30 62 1
66 31 63 1
67 31 64 1
68 32 65 1
69 32 66 1
70 33 67 1
71 34 68 1
72 34 69 1
73 38 70 1
74 38 71 1
75 38 72 1
76 39 73 1
77 41 74 1
78 41 75 1
79 41 76 1
80 42 77 1
81 42 78 1
82 42 79 1
83 43 80 1
84 28 81 1
85 34 82 1
86 40 83 1