@COMMENT
LIGANDBOX_ID = D06884-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06884
NAME = Lymecycline_(INN)
MOLECULAR_FORMULA = C29H38N4O10
MOLECULAR_WEIGHT = 602.641
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 10
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 242.9800
HOMO = -12.3982
LUMO = -7.9708
mLOGS = 2.050
mLOGD = -3.018
mLOGPA = -5.590
@MOLECULE
D06884-03
83 86 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 4.4395 -4.0717 -3.9683 C.ar 1 LGD -0.0452
2 C2 5.2060 -3.6696 -2.8711 C.ar 1 LGD -0.1536
3 C3 4.5843 -3.1784 -1.7144 C.ar 1 LGD 0.2136
4 C4 3.1691 -3.0654 -1.6476 C.ar 1 LGD -0.2778
5 C5 2.3977 -3.4435 -2.7783 C.ar 1 LGD -0.0715
6 C6 3.0452 -3.9647 -3.9211 C.ar 1 LGD -0.1639
7 C7 2.4705 -2.5835 -0.3856 C.2 1 LGD 0.5713
8 C8 1.0303 -2.1364 -0.4879 C.2 1 LGD -0.2447
9 C9 0.5002 -2.0301 -1.9314 C.3 1 LGD -0.0232
10 C10 0.8671 -3.3080 -2.7474 C.3 1 LGD 0.2200
11 C11 0.2783 -1.7964 0.6059 C.2 1 LGD 0.0700
12 C12 -1.1785 -1.3196 0.4910 C.3 1 LGD 0.0544
13 C13 -1.3444 -0.6372 -0.8947 C.3 1 LGD -0.0748
14 C14 -1.0056 -1.6323 -2.0203 C.3 1 LGD -0.0749
15 C15 -1.6357 -0.3584 1.6305 C.2 1 LGD 0.5250
16 C16 -2.0885 1.0362 1.2585 C.2 1 LGD -0.2515
17 C17 -2.6347 1.2247 0.0189 C.2 1 LGD 0.1199
18 C18 -2.6948 0.1113 -1.0213 C.3 1 LGD 0.1220
19 O1 5.3829 -2.8112 -0.6693 O.3 1 LGD -0.4732
20 O2 3.0701 -2.5642 0.6759 O.2 1 LGD -0.4773
21 O3 0.7340 -1.8907 1.8668 O.3 1 LGD -0.4171
22 O4 -1.6006 -0.7283 2.7928 O.2 1 LGD -0.3987
23 O5 -3.1076 2.3923 -0.4460 O.3 1 LGD -0.4773
24 C19 -2.0135 2.1364 2.2954 C.2 1 LGD 0.6876
25 N1 -2.4489 3.4255 2.0139 N.am 1 LGD -0.6226
26 O6 -1.5423 1.9362 3.4024 O.2 1 LGD -0.5387
27 C20 -2.3631 4.5270 2.9806 C.3 1 LGD 0.3120
28 N2 -0.9620 4.7113 3.4015 N.4 1 LGD -0.7739
29 C21 -0.1155 5.2201 2.3044 C.3 1 LGD 0.0980
30 C22 1.3714 5.0223 2.6727 C.3 1 LGD -0.1164
31 C23 1.7856 3.5279 2.7413 C.3 1 LGD -0.0809
32 C24 1.7807 2.8373 1.3518 C.3 1 LGD -0.0768
33 C25 2.0238 1.3093 1.4363 C.3 1 LGD -0.0669
34 N3 2.0717 0.7584 0.0674 N.4 1 LGD -0.8025
35 C26 3.3219 0.9524 2.1781 C.2 1 LGD 0.9111
36 O7 4.3716 1.3204 1.6796 O.co2 1 LGD -0.7280
37 O8 3.2061 0.3037 3.2011 O.co2 1 LGD -0.7280
38 C27 0.2544 -4.6039 -2.1455 C.3 1 LGD -0.0776
39 O9 0.3590 -3.1495 -4.0744 O.3 1 LGD -0.5882
40 N4 -3.8584 -0.7997 -0.8285 N.4 1 LGD -0.6709
41 C28 -4.2884 -1.3734 -2.1216 C.3 1 LGD 0.0831
42 C29 -5.0483 -0.1474 -0.2366 C.3 1 LGD 0.0831
43 O10 -2.0189 -2.4788 0.5812 O.3 1 LGD -0.6112
44 H1 4.9255 -4.4662 -4.8563 H 1 LGD 0.1633
45 H2 6.2888 -3.7502 -2.9115 H 1 LGD 0.1769
46 H3 2.4731 -4.2941 -4.7837 H 1 LGD 0.1556
47 H4 1.0481 -1.1972 -2.3935 H 1 LGD 0.0451
48 H5 -0.5801 0.1497 -0.9610 H 1 LGD 0.0720
49 H6 -1.2092 -1.1715 -2.9956 H 1 LGD 0.0761
50 H7 -1.6462 -2.5174 -1.9500 H 1 LGD 0.0761
51 H8 -2.7646 0.5528 -2.0172 H 1 LGD 0.1211
52 H9 4.8056 -2.5882 0.0849 H 1 LGD 0.4619
53 H10 0.0346 -1.5856 2.4737 H 1 LGD 0.4513
54 H11 -3.4270 2.2547 -1.3553 H 1 LGD 0.4668
55 H12 -2.8433 3.6062 1.1019 H 1 LGD 0.3539
56 H13 -2.9731 4.2783 3.8520 H 1 LGD 0.1223
57 H14 -2.7395 5.4472 2.5284 H 1 LGD 0.1223
58 H15 -0.6152 3.8086 3.7002 H 1 LGD 0.4756
59 H16 -0.3302 6.2788 2.1468 H 1 LGD 0.0976
60 H17 -0.3400 4.6760 1.3855 H 1 LGD 0.0976
61 H18 1.5730 5.5029 3.6388 H 1 LGD 0.0952
62 H19 1.9968 5.5372 1.9321 H 1 LGD 0.0952
63 H20 1.1262 2.9837 3.4291 H 1 LGD 0.0860
64 H21 2.7947 3.4675 3.1695 H 1 LGD 0.0860
65 H22 2.5485 3.2997 0.7176 H 1 LGD 0.0285
66 H23 0.8167 3.0049 0.8559 H 1 LGD 0.0285
67 H24 1.1990 0.8423 1.9774 H 1 LGD 0.0737
68 H25 2.8862 1.1292 -0.4039 H 1 LGD 0.4378
69 H26 2.1514 -0.2482 0.1176 H 1 LGD 0.4378
70 H27 -0.8415 -4.5841 -2.1589 H 1 LGD 0.0580
71 H28 0.5779 -4.7548 -1.1082 H 1 LGD 0.0580
72 H29 0.5773 -5.4814 -2.7200 H 1 LGD 0.0580
73 H30 0.9303 -2.5020 -4.5231 H 1 LGD 0.4156
74 H31 -4.6118 -0.5723 -2.7889 H 1 LGD 0.1100
75 H32 -5.1201 -2.0613 -1.9577 H 1 LGD 0.1100
76 H33 -3.4664 -1.9165 -2.5876 H 1 LGD 0.1100
77 H34 -4.8052 0.2345 0.7568 H 1 LGD 0.1100
78 H35 -5.8586 -0.8737 -0.1490 H 1 LGD 0.1100
79 H36 -5.3717 0.6781 -0.8732 H 1 LGD 0.1100
80 H37 -1.7348 -2.9886 1.3619 H 1 LGD 0.4792
81 H38 -0.9195 5.3498 4.1835 H 1 LGD 0.4756
82 H39 1.2380 1.0140 -0.4396 H 1 LGD 0.4378
83 H40 -3.5654 -1.5533 -0.2158 H 1 LGD 0.4898
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 2
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 1
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 3 19 1
23 7 20 2
24 11 21 1
25 15 22 2
26 17 23 1
27 16 24 1
28 24 25 am
29 24 26 2
30 25 27 1
31 27 28 1
32 28 29 1
33 29 30 1
34 30 31 1
35 31 32 1
36 32 33 1
37 33 34 1
38 33 35 1
39 35 36 2
40 35 37 1
41 10 38 1
42 10 39 1
43 18 40 1
44 40 41 1
45 40 42 1
46 12 43 1
47 1 44 1
48 2 45 1
49 6 46 1
50 9 47 1
51 13 48 1
52 14 49 1
53 14 50 1
54 18 51 1
55 19 52 1
56 21 53 1
57 23 54 1
58 25 55 1
59 27 56 1
60 27 57 1
61 28 58 1
62 29 59 1
63 29 60 1
64 30 61 1
65 30 62 1
66 31 63 1
67 31 64 1
68 32 65 1
69 32 66 1
70 33 67 1
71 34 68 1
72 34 69 1
73 38 70 1
74 38 71 1
75 38 72 1
76 39 73 1
77 41 74 1
78 41 75 1
79 41 76 1
80 42 77 1
81 42 78 1
82 42 79 1
83 43 80 1
84 28 81 1
85 34 82 1
86 40 83 1