@COMMENT
LIGANDBOX_ID = D06884-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06884
NAME = Lymecycline_(INN)
MOLECULAR_FORMULA = C29H38N4O10
MOLECULAR_WEIGHT = 602.641
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 10
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 242.9800
HOMO = -12.3982
LUMO = -7.9708
mLOGS = 2.050
mLOGD = -3.018
mLOGPA = -5.590
@MOLECULE
D06884-04
83 86 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -5.5877 4.4992 0.7601 C.ar 1 LGD -0.0474
2 C2 -4.7544 4.8021 1.8408 C.ar 1 LGD -0.1543
3 C3 -3.7530 3.9042 2.2374 C.ar 1 LGD 0.2166
4 C4 -3.5596 2.6831 1.5366 C.ar 1 LGD -0.2743
5 C5 -4.3841 2.3992 0.4149 C.ar 1 LGD -0.0731
6 C6 -5.4071 3.3046 0.0544 C.ar 1 LGD -0.1675
7 C7 -2.5250 1.6622 1.9877 C.2 1 LGD 0.5745
8 C8 -2.1466 0.5595 1.0271 C.2 1 LGD -0.2536
9 C9 -2.6521 0.7730 -0.4031 C.3 1 LGD -0.0214
10 C10 -4.1757 1.1061 -0.3902 C.3 1 LGD 0.2209
11 C11 -1.3829 -0.5130 1.3850 C.2 1 LGD 0.0773
12 C12 -1.0149 -1.6230 0.3913 C.3 1 LGD 0.0686
13 C13 -0.9093 -1.0221 -1.0484 C.3 1 LGD -0.0470
14 C14 -2.2545 -0.3481 -1.4149 C.3 1 LGD -0.0724
15 C15 0.2857 -2.3983 0.7721 C.2 1 LGD 0.5315
16 C16 1.4427 -2.3207 -0.1844 C.2 1 LGD -0.2356
17 C17 1.1421 -2.2442 -1.5131 C.2 1 LGD 0.1081
18 C18 -0.3336 -2.1578 -1.9689 C.3 1 LGD 0.1168
19 O1 -2.9764 4.2472 3.3069 O.3 1 LGD -0.4724
20 O2 -2.0315 1.7368 3.1001 O.2 1 LGD -0.4719
21 O3 -0.9389 -0.7075 2.6389 O.3 1 LGD -0.4170
22 O4 0.3673 -3.0060 1.8275 O.2 1 LGD -0.3987
23 O5 2.0704 -2.0988 -2.4747 O.3 1 LGD -0.4841
24 C19 2.8534 -2.4197 0.3506 C.2 1 LGD 0.6904
25 N1 3.9483 -2.4780 -0.5028 N.am 1 LGD -0.6226
26 O6 3.0742 -2.4351 1.5501 O.2 1 LGD -0.5345
27 C20 5.3307 -2.5966 -0.0231 C.3 1 LGD 0.3114
28 N2 5.6556 -1.4503 0.8447 N.4 1 LGD -0.7734
29 C21 5.7168 -0.1835 0.0891 C.3 1 LGD 0.0986
30 C22 5.6579 1.0037 1.0757 C.3 1 LGD -0.1170
31 C23 4.3121 1.0860 1.8446 C.3 1 LGD -0.0814
32 C24 3.1136 1.4455 0.9277 C.3 1 LGD -0.0775
33 C25 1.7437 1.2716 1.6275 C.3 1 LGD -0.0687
34 N3 0.6862 1.7304 0.7051 N.4 1 LGD -0.8066
35 C26 1.6529 2.0438 2.9545 C.2 1 LGD 0.9181
36 O7 1.4775 3.2487 2.8911 O.co2 1 LGD -0.7308
37 O8 1.7284 1.3867 3.9762 O.co2 1 LGD -0.7308
38 C27 -5.0312 -0.0302 0.2379 C.3 1 LGD -0.0782
39 O9 -4.6033 1.2940 -1.7418 O.3 1 LGD -0.5949
40 N4 -0.4852 -2.0436 -3.4592 N.4 1 LGD -0.6788
41 C28 -0.0593 -3.3189 -4.0915 C.3 1 LGD 0.0743
42 C29 -1.8730 -1.9182 -3.9611 C.3 1 LGD 0.0743
43 O10 -2.0702 -2.5927 0.4098 O.3 1 LGD -0.5762
44 H1 -6.3728 5.1909 0.4675 H 1 LGD 0.1618
45 H2 -4.8932 5.7331 2.3835 H 1 LGD 0.1760
46 H3 -6.0734 3.0895 -0.7761 H 1 LGD 0.1530
47 H4 -2.1402 1.6758 -0.7643 H 1 LGD 0.0408
48 H5 -0.1695 -0.2109 -1.0369 H 1 LGD 0.0431
49 H6 -2.1565 0.1507 -2.3834 H 1 LGD 0.0693
50 H7 -3.0425 -1.1039 -1.5103 H 1 LGD 0.0693
51 H8 -0.8433 -3.0821 -1.6893 H 1 LGD 0.1553
52 H9 -2.3880 3.4942 3.5037 H 1 LGD 0.4645
53 H10 -0.4431 -1.5464 2.6666 H 1 LGD 0.4511
54 H11 1.6220 -2.1487 -3.3353 H 1 LGD 0.4366
55 H12 3.7771 -2.4587 -1.4978 H 1 LGD 0.3499
56 H13 5.4262 -3.5221 0.5492 H 1 LGD 0.1223
57 H14 6.0167 -2.6261 -0.8724 H 1 LGD 0.1223
58 H15 4.9286 -1.3868 1.5457 H 1 LGD 0.4763
59 H16 6.6427 -0.1525 -0.4885 H 1 LGD 0.0964
60 H17 4.8723 -0.1280 -0.5997 H 1 LGD 0.0964
61 H18 6.4840 0.9197 1.7936 H 1 LGD 0.0944
62 H19 5.8176 1.9387 0.5236 H 1 LGD 0.0944
63 H20 4.1141 0.1383 2.3612 H 1 LGD 0.0889
64 H21 4.4045 1.8490 2.6285 H 1 LGD 0.0889
65 H22 3.2245 2.4817 0.5822 H 1 LGD 0.0262
66 H23 3.1217 0.8104 0.0334 H 1 LGD 0.0262
67 H24 1.5850 0.2153 1.8523 H 1 LGD 0.0765
68 H25 0.7759 2.7303 0.5821 H 1 LGD 0.4371
69 H26 -0.2179 1.5322 1.1113 H 1 LGD 0.4371
70 H27 -4.9353 -0.9704 -0.3174 H 1 LGD 0.0590
71 H28 -4.7386 -0.2218 1.2778 H 1 LGD 0.0590
72 H29 -6.0928 0.2479 0.2432 H 1 LGD 0.0590
73 H30 -4.3052 2.1795 -2.0137 H 1 LGD 0.4155
74 H31 -0.7402 -4.1169 -3.7875 H 1 LGD 0.1182
75 H32 -0.0936 -3.2195 -5.1784 H 1 LGD 0.1182
76 H33 0.9514 -3.5962 -3.7926 H 1 LGD 0.1182
77 H34 -2.2058 -0.8834 -3.9122 H 1 LGD 0.1182
78 H35 -1.9150 -2.2245 -5.0085 H 1 LGD 0.1182
79 H36 -2.5404 -2.5521 -3.3745 H 1 LGD 0.1182
80 H37 -2.1818 -2.8924 1.3300 H 1 LGD 0.4646
81 H38 6.5396 -1.6093 1.3078 H 1 LGD 0.4763
82 H39 0.7760 1.2655 -0.1854 H 1 LGD 0.4371
83 H40 0.0599 -1.2667 -3.8105 H 1 LGD 0.4469
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 2
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 1
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 3 19 1
23 7 20 2
24 11 21 1
25 15 22 2
26 17 23 1
27 16 24 1
28 24 25 am
29 24 26 2
30 25 27 1
31 27 28 1
32 28 29 1
33 29 30 1
34 30 31 1
35 31 32 1
36 32 33 1
37 33 34 1
38 33 35 1
39 35 36 2
40 35 37 1
41 10 38 1
42 10 39 1
43 18 40 1
44 40 41 1
45 40 42 1
46 12 43 1
47 1 44 1
48 2 45 1
49 6 46 1
50 9 47 1
51 13 48 1
52 14 49 1
53 14 50 1
54 18 51 1
55 19 52 1
56 21 53 1
57 23 54 1
58 25 55 1
59 27 56 1
60 27 57 1
61 28 58 1
62 29 59 1
63 29 60 1
64 30 61 1
65 30 62 1
66 31 63 1
67 31 64 1
68 32 65 1
69 32 66 1
70 33 67 1
71 34 68 1
72 34 69 1
73 38 70 1
74 38 71 1
75 38 72 1
76 39 73 1
77 41 74 1
78 41 75 1
79 41 76 1
80 42 77 1
81 42 78 1
82 42 79 1
83 43 80 1
84 28 81 1
85 34 82 1
86 40 83 1