@COMMENT
LIGANDBOX_ID = D06884-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D06884
NAME = Lymecycline_(INN)
MOLECULAR_FORMULA = C29H38N4O10
MOLECULAR_WEIGHT = 602.641
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 10
NUM_OF_ACCEPTOR = 10
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 242.9800
HOMO = -12.3982
LUMO = -7.9708
mLOGS = 2.050
mLOGD = -3.018
mLOGPA = -5.590
@MOLECULE
D06884-05
83 86 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -3.0905 5.3781 3.6941 C.ar 1 LGD -0.0518
2 C2 -3.9785 5.0765 2.6579 C.ar 1 LGD -0.1598
3 C3 -3.5446 4.3434 1.5443 C.ar 1 LGD 0.2169
4 C4 -2.2024 3.8852 1.4581 C.ar 1 LGD -0.2489
5 C5 -1.3134 4.1672 2.5292 C.ar 1 LGD -0.0615
6 C6 -1.7663 4.9310 3.6287 C.ar 1 LGD -0.1646
7 C7 -1.6966 3.1372 0.2324 C.2 1 LGD 0.6278
8 C8 -0.4016 2.3666 0.3471 C.2 1 LGD -0.1343
9 C9 0.1577 2.2708 1.7821 C.3 1 LGD -0.0369
10 C10 0.1382 3.6650 2.4809 C.3 1 LGD 0.2158
11 C11 0.1956 1.7549 -0.7233 C.2 1 LGD 0.0487
12 C12 1.5096 0.9671 -0.5951 C.3 1 LGD 0.0748
13 C13 1.5744 0.3914 0.8451 C.3 1 LGD -0.0944
14 C14 1.5305 1.5335 1.8772 C.3 1 LGD -0.0598
15 C15 1.6821 -0.1687 -1.6481 C.2 1 LGD 0.5431
16 C16 1.7869 -1.5942 -1.1566 C.2 1 LGD -0.2619
17 C17 2.3198 -1.8055 0.0849 C.2 1 LGD 0.1511
18 C18 2.7014 -0.6553 1.0122 C.3 1 LGD 0.1202
19 O1 -4.4524 4.0836 0.5586 O.3 1 LGD -0.4848
20 O2 -2.3213 3.1867 -0.8151 O.2 1 LGD -0.5509
21 O3 -0.2850 1.8289 -1.9770 O.3 1 LGD -0.4727
22 O4 1.7027 0.0992 -2.8387 O.2 1 LGD -0.4443
23 O5 2.5073 -3.0096 0.6488 O.3 1 LGD -0.4835
24 C19 1.3961 -2.7239 -2.0844 C.2 1 LGD 0.7025
25 N1 1.4912 -4.0512 -1.6852 N.am 1 LGD -0.6222
26 O6 0.9590 -2.5068 -3.2026 O.2 1 LGD -0.5786
27 C20 1.1321 -5.1764 -2.5567 C.3 1 LGD 0.3107
28 N2 -0.2707 -5.0447 -2.9914 N.4 1 LGD -0.7747
29 C21 -1.2203 -5.2457 -1.8790 C.3 1 LGD 0.1002
30 C22 -2.6210 -4.7602 -2.3134 C.3 1 LGD -0.1072
31 C23 -2.7073 -3.2152 -2.4417 C.3 1 LGD -0.1125
32 C24 -2.7681 -2.5081 -1.0616 C.3 1 LGD -0.0975
33 C25 -2.5721 -0.9695 -1.1360 C.3 1 LGD -0.0527
34 N3 -3.5249 -0.3747 -2.1008 N.4 1 LGD -0.7976
35 C26 -2.7333 -0.3358 0.2636 C.2 1 LGD 0.9367
36 O7 -1.8499 -0.5585 1.0702 O.co2 1 LGD -0.7675
37 O8 -3.7152 0.3589 0.4656 O.co2 1 LGD -0.7675
38 C27 1.0171 4.7188 1.7509 C.3 1 LGD -0.0779
39 O9 0.6469 3.5029 3.8075 O.3 1 LGD -0.5932
40 N4 4.0413 -0.0819 0.7052 N.4 1 LGD -0.6721
41 C28 4.6530 0.4804 1.9280 C.3 1 LGD 0.0836
42 C29 5.0055 -1.0623 0.1573 C.3 1 LGD 0.0836
43 O10 2.5911 1.8850 -0.8124 O.3 1 LGD -0.6214
44 H1 -3.4280 5.9571 4.5492 H 1 LGD 0.1558
45 H2 -5.0074 5.4209 2.7126 H 1 LGD 0.1667
46 H3 -1.0947 5.1868 4.4432 H 1 LGD 0.1522
47 H4 -0.5485 1.6383 2.3372 H 1 LGD 0.1040
48 H5 0.6509 -0.1781 1.0056 H 1 LGD 0.1490
49 H6 1.6601 1.1239 2.8872 H 1 LGD 0.0636
50 H7 2.3592 2.2292 1.7098 H 1 LGD 0.0636
51 H8 2.7054 -1.0109 2.0443 H 1 LGD 0.1239
52 H9 -3.9830 3.6108 -0.1536 H 1 LGD 0.4519
53 H10 0.3191 1.3367 -2.5626 H 1 LGD 0.4317
54 H11 2.8302 -2.8752 1.5572 H 1 LGD 0.4703
55 H12 1.8406 -4.2442 -0.7574 H 1 LGD 0.3612
56 H13 1.7844 -5.1627 -3.4328 H 1 LGD 0.1212
57 H14 1.2689 -6.1185 -2.0213 H 1 LGD 0.1212
58 H15 -0.3845 -4.1112 -3.3647 H 1 LGD 0.4697
59 H16 -1.2495 -6.3064 -1.6223 H 1 LGD 0.1094
60 H17 -0.8899 -4.6802 -1.0057 H 1 LGD 0.1094
61 H18 -2.8851 -5.2259 -3.2718 H 1 LGD 0.0931
62 H19 -3.3651 -5.1066 -1.5845 H 1 LGD 0.0931
63 H20 -1.8555 -2.8353 -3.0194 H 1 LGD 0.0446
64 H21 -3.6099 -2.9623 -3.0125 H 1 LGD 0.0446
65 H22 -3.7326 -2.7316 -0.5870 H 1 LGD 0.0823
66 H23 -1.9924 -2.9221 -0.4051 H 1 LGD 0.0823
67 H24 -1.5575 -0.7530 -1.4746 H 1 LGD 0.0699
68 H25 -3.3747 0.6243 -2.1434 H 1 LGD 0.4527
69 H26 -4.4679 -0.5419 -1.7769 H 1 LGD 0.4527
70 H27 2.0767 4.4380 1.7482 H 1 LGD 0.0522
71 H28 0.6986 4.8521 0.7097 H 1 LGD 0.0522
72 H29 0.9343 5.6943 2.2470 H 1 LGD 0.0522
73 H30 -0.0021 2.9663 4.2953 H 1 LGD 0.4187
74 H31 4.7942 -0.3126 2.6648 H 1 LGD 0.1070
75 H32 5.6218 0.9201 1.6836 H 1 LGD 0.1070
76 H33 4.0105 1.2517 2.3524 H 1 LGD 0.1070
77 H34 4.6329 -1.4577 -0.7894 H 1 LGD 0.1070
78 H35 5.9668 -0.5744 -0.0149 H 1 LGD 0.1070
79 H36 5.1390 -1.8827 0.8648 H 1 LGD 0.1070
80 H37 2.3782 2.4073 -1.6071 H 1 LGD 0.4683
81 H38 -0.4650 -5.7136 -3.7235 H 1 LGD 0.4697
82 H39 -3.3973 -0.7808 -3.0160 H 1 LGD 0.4527
83 H40 3.9135 0.6623 0.0277 H 1 LGD 0.4889
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 2
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 1
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 3 19 1
23 7 20 2
24 11 21 1
25 15 22 2
26 17 23 1
27 16 24 1
28 24 25 am
29 24 26 2
30 25 27 1
31 27 28 1
32 28 29 1
33 29 30 1
34 30 31 1
35 31 32 1
36 32 33 1
37 33 34 1
38 33 35 1
39 35 36 2
40 35 37 1
41 10 38 1
42 10 39 1
43 18 40 1
44 40 41 1
45 40 42 1
46 12 43 1
47 1 44 1
48 2 45 1
49 6 46 1
50 9 47 1
51 13 48 1
52 14 49 1
53 14 50 1
54 18 51 1
55 19 52 1
56 21 53 1
57 23 54 1
58 25 55 1
59 27 56 1
60 27 57 1
61 28 58 1
62 29 59 1
63 29 60 1
64 30 61 1
65 30 62 1
66 31 63 1
67 31 64 1
68 32 65 1
69 32 66 1
70 33 67 1
71 34 68 1
72 34 69 1
73 38 70 1
74 38 71 1
75 38 72 1
76 39 73 1
77 41 74 1
78 41 75 1
79 41 76 1
80 42 77 1
81 42 78 1
82 42 79 1
83 43 80 1
84 28 81 1
85 34 82 1
86 40 83 1