@COMMENT
LIGANDBOX_ID = D08013-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-01
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 24.1880 -18.9360 0.0800 C.3 1 LGD 0.1380
2 C2 23.3990 -17.7140 0.6270 C.3 1 LGD 0.1366
3 O1 23.5560 -20.1230 0.6150 O.3 1 LGD -0.4926
4 C3 25.6920 -18.9220 0.4750 C.3 1 LGD 0.0918
5 C4 24.0970 -16.3420 0.3600 C.3 1 LGD 0.0902
6 O2 22.0900 -17.7270 0.0570 O.3 1 LGD -0.5685
7 C5 23.8380 -21.3710 -0.0490 C.3 1 LGD 0.2912
8 C6 26.3480 -17.5760 0.0870 C.3 1 LGD -0.1365
9 N1 25.8600 -19.1610 1.9210 N.4 1 LGD -0.8185
10 O3 23.5070 -15.3080 1.1930 O.3 1 LGD -0.5165
11 C7 25.6100 -16.3690 0.7160 C.3 1 LGD 0.0991
12 C8 23.2330 -22.5190 0.7990 C.3 1 LGD 0.1323
13 O4 23.2180 -21.3770 -1.3580 O.3 1 LGD -0.3913
14 C9 22.2230 -14.7580 0.8120 C.3 1 LGD 0.3312
15 N2 26.2490 -15.1230 0.2640 N.4 1 LGD -0.8049
16 C10 21.6730 -22.4250 0.8120 C.3 1 LGD 0.0453
17 O5 23.6750 -23.7810 0.2950 O.3 1 LGD -0.5383
18 C11 21.7890 -21.1250 -1.3720 C.3 1 LGD 0.1416
19 O6 21.1590 -15.5700 1.3650 O.3 1 LGD -0.4291
20 C12 22.0830 -13.3180 1.3840 C.3 1 LGD 0.0797
21 C13 21.0520 -22.2680 -0.6220 C.3 1 LGD 0.1012
22 N3 21.0580 -23.5550 1.5460 N.4 1 LGD -0.7373
23 C14 21.1500 -15.7160 2.8080 C.3 1 LGD 0.1209
24 C15 22.0150 -13.3210 2.9330 C.3 1 LGD -0.0981
25 N4 23.1960 -12.4710 0.9300 N.4 1 LGD -0.8055
26 C16 21.0870 -23.5700 -1.4770 C.3 1 LGD -0.1289
27 O7 19.6820 -21.8930 -0.4750 O.3 1 LGD -0.5448
28 C17 21.2210 -23.5630 3.0080 C.3 1 LGD 0.0714
29 C18 20.9390 -14.3110 3.4330 C.3 1 LGD -0.0927
30 C19 20.0490 -16.7490 3.2150 C.3 1 LGD 0.1281
31 N5 20.4390 -18.1130 2.8040 N.4 1 LGD -0.7562
32 C20 18.6550 -16.4470 2.6060 C.3 1 LGD -0.1306
33 C21 21.4050 -18.8250 3.6550 C.3 1 LGD 0.0690
34 H1 24.1090 -18.9270 -1.0160 H 1 LGD 0.1519
35 H2 23.3240 -17.8320 1.7140 H 1 LGD 0.0189
36 H3 26.2060 -19.7230 -0.0700 H 1 LGD 0.1762
37 H4 23.9920 -16.0840 -0.7030 H 1 LGD 0.1086
38 H5 21.6050 -16.9800 0.4660 H 1 LGD 0.4410
39 H6 24.9210 -21.5150 -0.1450 H 1 LGD 0.1163
40 H7 27.4010 -17.5750 0.3980 H 1 LGD 0.1373
41 H8 26.3420 -17.4790 -1.0070 H 1 LGD 0.1373
42 H9 26.8440 -19.1560 2.1500 H 1 LGD 0.4716
43 H10 25.3680 -20.0070 2.1720 H 1 LGD 0.4716
44 H11 25.7050 -16.4310 1.8080 H 1 LGD 0.1095
45 H12 23.5940 -22.4020 1.8280 H 1 LGD 0.0839
46 H13 22.1410 -14.7240 -0.2810 H 1 LGD 0.1315
47 H14 25.7360 -14.3400 0.6440 H 1 LGD 0.4800
48 H15 27.2300 -15.1440 0.5060 H 1 LGD 0.4800
49 H16 21.4180 -21.5050 1.3550 H 1 LGD 0.0653
50 H17 23.5850 -23.7450 -0.6740 H 1 LGD 0.4610
51 H18 21.5650 -20.1620 -0.8970 H 1 LGD 0.1028
52 H19 21.4330 -21.0750 -2.4080 H 1 LGD 0.1028
53 H20 21.1460 -12.8940 1.0000 H 1 LGD 0.1790
54 H21 21.3940 -24.4260 1.1570 H 1 LGD 0.4796
55 H22 22.1220 -16.0960 3.1480 H 1 LGD 0.0444
56 H23 22.9910 -13.6080 3.3490 H 1 LGD 0.1013
57 H24 21.7920 -12.3120 3.3020 H 1 LGD 0.1013
58 H25 24.0650 -12.9010 1.2150 H 1 LGD 0.4688
59 H26 23.0580 -11.5290 1.2690 H 1 LGD 0.4688
60 H27 22.1100 -23.8610 -1.7400 H 1 LGD 0.0863
61 H28 20.6170 -24.4120 -0.9540 H 1 LGD 0.0863
62 H29 20.5450 -23.4220 -2.4200 H 1 LGD 0.0863
63 H30 19.3510 -22.3540 0.3160 H 1 LGD 0.3965
64 H31 20.8370 -22.6300 3.4380 H 1 LGD 0.1132
65 H32 20.6640 -24.4050 3.4370 H 1 LGD 0.1132
66 H33 22.2800 -23.6720 3.2750 H 1 LGD 0.1132
67 H34 19.9470 -13.9220 3.1700 H 1 LGD 0.1217
68 H35 20.9790 -14.3800 4.5280 H 1 LGD 0.1217
69 H36 19.9420 -16.7340 4.3080 H 1 LGD 0.1491
70 H37 20.7510 -18.1030 1.8420 H 1 LGD 0.4667
71 H38 18.2780 -15.4710 2.9350 H 1 LGD 0.1036
72 H39 18.6870 -16.4530 1.5090 H 1 LGD 0.1036
73 H40 17.9270 -17.2040 2.9240 H 1 LGD 0.1036
74 H41 21.0170 -18.9110 4.6770 H 1 LGD 0.1001
75 H42 21.5770 -19.8320 3.2570 H 1 LGD 0.1001
76 H43 22.3630 -18.2910 3.6840 H 1 LGD 0.1001
77 H44 25.5245 -18.3644 2.4238 H 1 LGD 0.4716
78 H45 26.1070 -15.0230 -0.7208 H 1 LGD 0.4800
79 H46 20.0631 -23.4572 1.5199 H 1 LGD 0.4796
80 H47 23.2440 -12.5040 -0.0683 H 1 LGD 0.4688
81 H48 19.6842 -18.7397 2.9977 H 1 LGD 0.4667
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1