@COMMENT
LIGANDBOX_ID = D08013-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-02
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.0319 -1.3278 0.2419 C.3 1 LGD 0.1446
2 C2 0.2823 -0.1446 0.9416 C.3 1 LGD 0.1163
3 O1 0.9493 -1.2343 -1.2057 O.3 1 LGD -0.4661
4 C3 2.5431 -1.3199 0.5862 C.3 1 LGD 0.1291
5 C4 0.9207 1.2467 0.6150 C.3 1 LGD 0.0936
6 O2 -1.0996 -0.1801 0.6149 O.3 1 LGD -0.5923
7 C5 -0.2550 -1.7116 -1.8543 C.3 1 LGD 0.3032
8 C6 3.1854 0.0482 0.2460 C.3 1 LGD -0.1324
9 N1 2.7410 -1.6170 2.0208 N.4 1 LGD -0.8303
10 O3 0.3600 2.2981 1.4527 O.3 1 LGD -0.5151
11 C7 2.4463 1.2310 0.9195 C.3 1 LGD 0.1082
12 C8 -0.1514 -1.4516 -3.3801 C.3 1 LGD 0.1266
13 O4 -0.4155 -3.1321 -1.6225 O.3 1 LGD -0.4145
14 C9 -0.9234 2.8728 1.0922 C.3 1 LGD 0.3293
15 N2 3.0579 2.4922 0.4636 N.4 1 LGD -0.8133
16 C10 0.9088 -2.3859 -4.0458 C.3 1 LGD 0.0465
17 O5 -1.4312 -1.6273 -3.9908 O.3 1 LGD -0.5568
18 C11 0.6679 -3.9735 -2.0831 C.3 1 LGD 0.1162
19 O6 -2.0001 2.0968 1.6697 O.3 1 LGD -0.4268
20 C12 -1.0372 4.3230 1.6509 C.3 1 LGD 0.0884
21 C13 0.7548 -3.8876 -3.6300 C.3 1 LGD 0.1078
22 N3 0.8851 -2.2517 -5.5194 N.4 1 LGD -0.7341
23 C14 -2.0024 1.9711 3.1133 C.3 1 LGD 0.1193
24 C15 -1.0766 4.3380 3.1991 C.3 1 LGD -0.1027
25 N4 0.0853 5.1609 1.1859 N.4 1 LGD -0.8193
26 C16 -0.4722 -4.6038 -4.2710 C.3 1 LGD -0.1017
27 O7 1.9236 -4.5865 -4.0554 O.3 1 LGD -0.5365
28 C17 1.4820 -0.9740 -5.9581 C.3 1 LGD 0.0881
29 C18 -2.1737 3.3855 3.7235 C.3 1 LGD -0.0937
30 C19 -3.1269 0.9726 3.5411 C.3 1 LGD 0.1275
31 N5 -2.7787 -0.4058 3.1314 N.4 1 LGD -0.7576
32 C20 -4.5123 1.3028 2.9286 C.3 1 LGD -0.1344
33 C21 -1.7334 -0.9916 3.9952 C.3 1 LGD 0.0858
34 H1 0.6016 -2.2798 0.5794 H 1 LGD 0.1214
35 H2 0.3799 -0.2932 2.0242 H 1 LGD 0.0255
36 H3 3.0391 -2.0991 0.0019 H 1 LGD 0.1759
37 H4 0.7703 1.4795 -0.4477 H 1 LGD 0.0995
38 H5 -1.4530 0.7118 0.7988 H 1 LGD 0.4493
39 H6 -1.1308 -1.1793 -1.4740 H 1 LGD 0.1254
40 H7 4.2399 0.0456 0.5517 H 1 LGD 0.1280
41 H8 3.1795 0.1844 -0.8437 H 1 LGD 0.1280
42 H9 3.7289 -1.6249 2.2372 H 1 LGD 0.4778
43 H10 2.3571 -2.5261 2.2415 H 1 LGD 0.4778
44 H11 2.5794 1.1543 2.0005 H 1 LGD 0.1150
45 H12 0.1672 -0.4119 -3.5254 H 1 LGD 0.0851
46 H13 -1.0264 2.8955 0.0005 H 1 LGD 0.1191
47 H14 2.6055 3.2670 0.9244 H 1 LGD 0.4780
48 H15 4.0422 2.5012 0.6939 H 1 LGD 0.4780
49 H16 1.8920 -2.0618 -3.6998 H 1 LGD 0.0862
50 H17 -1.9167 -2.2906 -3.4680 H 1 LGD 0.4574
51 H18 1.6169 -3.6571 -1.6319 H 1 LGD 0.0876
52 H19 0.4806 -5.0120 -1.7812 H 1 LGD 0.0876
53 H20 -1.9710 4.7535 1.2809 H 1 LGD 0.1766
54 H21 -0.0742 -2.3065 -5.8366 H 1 LGD 0.4852
55 H22 -1.0374 1.5734 3.4509 H 1 LGD 0.0475
56 H23 -0.1032 4.0291 3.6029 H 1 LGD 0.1006
57 H24 -1.2673 5.3567 3.5611 H 1 LGD 0.1006
58 H25 0.9514 4.7909 1.5472 H 1 LGD 0.4694
59 H26 -0.0338 6.1060 1.5260 H 1 LGD 0.4694
60 H27 -1.4233 -4.1994 -3.9075 H 1 LGD 0.0837
61 H28 -0.4628 -4.5222 -5.3648 H 1 LGD 0.0837
62 H29 -0.4651 -5.6724 -4.0198 H 1 LGD 0.0837
63 H30 2.6609 -3.9521 -4.0839 H 1 LGD 0.4051
64 H31 2.5133 -0.9105 -5.6056 H 1 LGD 0.1098
65 H32 1.4697 -0.9192 -7.0484 H 1 LGD 0.1098
66 H33 0.9081 -0.1397 -5.5505 H 1 LGD 0.1098
67 H34 -3.1575 3.7978 3.4674 H 1 LGD 0.1236
68 H35 -2.1234 3.3285 4.8186 H 1 LGD 0.1236
69 H36 -3.2190 0.9905 4.6294 H 1 LGD 0.1520
70 H37 -2.4687 -0.4062 2.1684 H 1 LGD 0.4696
71 H38 -4.8651 2.2914 3.2448 H 1 LGD 0.1012
72 H39 -4.4830 1.2818 1.8317 H 1 LGD 0.1012
73 H40 -5.2597 0.5696 3.2572 H 1 LGD 0.1012
74 H41 -2.0787 -1.0057 5.0308 H 1 LGD 0.1024
75 H42 -1.5244 -2.0132 3.6718 H 1 LGD 0.1024
76 H43 -0.8194 -0.3997 3.9264 H 1 LGD 0.1024
77 H44 2.2844 -0.9189 2.5900 H 1 LGD 0.4778
78 H45 2.9515 2.5867 -0.5368 H 1 LGD 0.4780
79 H46 1.4042 -3.0183 -5.9272 H 1 LGD 0.4852
80 H47 0.1125 5.1783 0.1758 H 1 LGD 0.4694
81 H48 -3.6065 -0.9832 3.1969 H 1 LGD 0.4696
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1