@COMMENT
LIGANDBOX_ID = D08013-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-03
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.5964 -0.5012 -1.0716 C.3 1 LGD 0.0925
2 C2 0.9292 0.6926 -0.3321 C.3 1 LGD 0.1186
3 O1 1.0269 -1.7133 -0.5268 O.3 1 LGD -0.5051
4 C3 3.1518 -0.5266 -0.9215 C.3 1 LGD 0.1056
5 C4 1.5714 2.0438 -0.7569 C.3 1 LGD 0.1444
6 O2 1.0495 0.5091 1.0788 O.3 1 LGD -0.6140
7 C5 1.2600 -2.9329 -1.2639 C.3 1 LGD 0.2956
8 C6 3.7738 0.8476 -1.2805 C.3 1 LGD -0.1350
9 N1 3.5361 -0.8837 0.4601 N.4 1 LGD -0.8291
10 O3 1.0065 3.1397 0.0084 O.3 1 LGD -0.4855
11 C7 3.1038 2.0189 -0.5152 C.3 1 LGD 0.1042
12 C8 0.6863 -4.1147 -0.4422 C.3 1 LGD 0.1254
13 O4 0.5774 -2.8774 -2.5400 O.3 1 LGD -0.3980
14 C9 -0.3037 3.6037 -0.4052 C.3 1 LGD 0.3382
15 N2 3.7027 3.2906 -0.9580 N.4 1 LGD -0.8140
16 C10 -0.8699 -4.0169 -0.3568 C.3 1 LGD 0.0845
17 O5 1.0906 -5.3586 -1.0155 O.3 1 LGD -0.5430
18 C11 -0.8476 -2.6226 -2.4817 C.3 1 LGD 0.1303
19 O6 -1.3485 2.7702 0.1553 O.3 1 LGD -0.4349
20 C12 -0.5267 5.0639 0.0844 C.3 1 LGD 0.0884
21 C13 -1.5546 -3.7958 -1.7480 C.3 1 LGD 0.1024
22 N3 -1.4486 -5.1926 0.3291 N.4 1 LGD -0.7331
23 C14 -1.4634 2.7290 1.6011 C.3 1 LGD 0.1168
24 C15 -0.6252 5.1335 1.6256 C.3 1 LGD -0.1027
25 N4 0.5668 5.9431 -0.3733 N.4 1 LGD -0.8189
26 C16 -1.5735 -5.0611 -2.6573 C.3 1 LGD -0.1496
27 O7 -2.9095 -3.4200 -1.5068 O.3 1 LGD -0.6230
28 C17 -1.1943 -5.1520 1.7832 C.3 1 LGD 0.0912
29 C18 -1.7150 4.1660 2.1302 C.3 1 LGD -0.0943
30 C19 -2.6034 1.7317 1.9801 C.3 1 LGD 0.1269
31 N5 -2.2081 0.3675 1.5779 N.4 1 LGD -0.7505
32 C20 -3.9616 2.0451 1.3014 C.3 1 LGD -0.1353
33 C21 -1.5034 -0.3167 2.6803 C.3 1 LGD 0.0782
34 H1 1.3476 -0.4176 -2.1381 H 1 LGD 0.1368
35 H2 -0.1316 0.6997 -0.6097 H 1 LGD 0.0938
36 H3 3.5592 -1.2856 -1.5939 H 1 LGD 0.1658
37 H4 1.3901 2.2057 -1.8279 H 1 LGD 0.0949
38 H5 0.7673 -0.4056 1.2596 H 1 LGD 0.4350
39 H6 2.3354 -3.0775 -1.4217 H 1 LGD 0.1140
40 H7 4.8516 0.8319 -1.0714 H 1 LGD 0.1318
41 H8 3.6689 1.0103 -2.3615 H 1 LGD 0.1318
42 H9 4.5426 -0.9108 0.5496 H 1 LGD 0.4769
43 H10 3.1570 -1.7911 0.6927 H 1 LGD 0.4769
44 H11 3.2878 1.9012 0.5547 H 1 LGD 0.1302
45 H12 1.0916 -4.0487 0.5751 H 1 LGD 0.0887
46 H13 -0.3706 3.5811 -1.4995 H 1 LGD 0.1151
47 H14 3.2741 4.0507 -0.4511 H 1 LGD 0.4803
48 H15 4.6960 3.2882 -0.7698 H 1 LGD 0.4803
49 H16 -1.1063 -3.1389 0.2473 H 1 LGD 0.0725
50 H17 1.1796 -5.2250 -1.9764 H 1 LGD 0.4612
51 H18 -1.0460 -1.6776 -1.9602 H 1 LGD 0.0868
52 H19 -1.2452 -2.5316 -3.5006 H 1 LGD 0.0868
53 H20 -1.4680 5.4244 -0.3374 H 1 LGD 0.1723
54 H21 -1.0511 -6.0350 -0.0660 H 1 LGD 0.4842
55 H22 -0.5242 2.3671 2.0368 H 1 LGD 0.0670
56 H23 0.3394 4.8686 2.0790 H 1 LGD 0.1014
57 H24 -0.8623 6.1573 1.9431 H 1 LGD 0.1014
58 H25 1.4391 5.6207 0.0187 H 1 LGD 0.4703
59 H26 0.3955 6.8898 -0.0621 H 1 LGD 0.4703
60 H27 -0.5670 -5.3540 -2.9757 H 1 LGD 0.0892
61 H28 -2.0323 -5.9186 -2.1496 H 1 LGD 0.0892
62 H29 -2.1503 -4.8695 -3.5716 H 1 LGD 0.0892
63 H30 -3.4737 -3.9514 -2.0967 H 1 LGD 0.4770
64 H31 -1.6176 -4.2375 2.2032 H 1 LGD 0.1091
65 H32 -1.6602 -6.0163 2.2606 H 1 LGD 0.1091
66 H33 -0.1194 -5.1737 1.9716 H 1 LGD 0.1091
67 H34 -2.6939 4.5342 1.8002 H 1 LGD 0.1174
68 H35 -1.7264 4.1614 3.2279 H 1 LGD 0.1174
69 H36 -2.7496 1.7478 3.0625 H 1 LGD 0.1488
70 H37 -1.6173 0.4278 0.7592 H 1 LGD 0.4536
71 H38 -4.3590 3.0129 1.6289 H 1 LGD 0.1000
72 H39 -3.8727 2.0598 0.2078 H 1 LGD 0.1000
73 H40 -4.7056 1.2840 1.5683 H 1 LGD 0.1000
74 H41 -2.1683 -0.4022 3.5422 H 1 LGD 0.1073
75 H42 -1.2015 -1.3152 2.3587 H 1 LGD 0.1073
76 H43 -0.6195 0.2569 2.9653 H 1 LGD 0.1073
77 H44 3.1580 -0.2007 1.1031 H 1 LGD 0.4769
78 H45 3.5524 3.4196 -1.9487 H 1 LGD 0.4803
79 H46 -2.4478 -5.1955 0.1715 H 1 LGD 0.4842
80 H47 0.6213 5.9337 -1.3823 H 1 LGD 0.4703
81 H48 -3.0380 -0.1611 1.3450 H 1 LGD 0.4536
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1