@COMMENT
LIGANDBOX_ID = D08013-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-04
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.1996 -0.5753 0.8842 C.3 1 LGD 0.1171
2 C2 -0.9751 0.6755 1.3921 C.3 1 LGD 0.1651
3 O1 -0.9037 -1.7523 1.3430 O.3 1 LGD -0.4640
4 C3 1.2685 -0.6269 1.4148 C.3 1 LGD 0.0989
5 C4 -0.1977 1.9877 1.1140 C.3 1 LGD 0.1136
6 O2 -2.2687 0.7398 0.7886 O.3 1 LGD -0.5776
7 C5 -0.5645 -2.9916 0.6834 C.3 1 LGD 0.2857
8 C6 2.0157 0.7158 1.2008 C.3 1 LGD -0.1272
9 N1 1.2653 -0.9537 2.8561 N.4 1 LGD -0.8250
10 O3 -0.0892 2.1410 -0.3244 O.3 1 LGD -0.4617
11 C7 1.2123 1.9144 1.7646 C.3 1 LGD 0.0752
12 C8 -1.1139 -4.1740 1.5219 C.3 1 LGD 0.1277
13 O4 -1.1727 -3.0243 -0.6293 O.3 1 LGD -0.4087
14 C9 0.0370 3.4859 -0.8344 C.3 1 LGD 0.3073
15 N2 1.9549 3.1724 1.5731 N.4 1 LGD -0.8359
16 C10 -2.6750 -4.1821 1.5158 C.3 1 LGD 0.0496
17 O5 -0.5961 -5.4090 1.0249 O.3 1 LGD -0.5489
18 C11 -2.6111 -2.8527 -0.6542 C.3 1 LGD 0.1106
19 O6 1.4145 3.7462 -1.2025 O.3 1 LGD -0.4657
20 C12 -0.8788 3.6501 -2.0802 C.3 1 LGD 0.1016
21 C13 -3.2870 -4.0446 0.0803 C.3 1 LGD 0.1054
22 N3 -3.2106 -5.3823 2.1962 N.4 1 LGD -0.7318
23 C14 1.9683 2.9217 -2.2587 C.3 1 LGD 0.1198
24 C15 -0.3578 2.8277 -3.2823 C.3 1 LGD -0.1036
25 N4 -2.2516 3.2140 -1.7513 N.4 1 LGD -0.8211
26 C16 -3.1714 -5.3349 -0.7854 C.3 1 LGD -0.0995
27 O7 -4.6768 -3.7562 0.2244 O.3 1 LGD -0.5405
28 C17 -3.0291 -5.3075 3.6602 C.3 1 LGD 0.0867
29 C18 1.1306 3.1402 -3.5450 C.3 1 LGD -0.0930
30 C19 3.4767 3.2807 -2.4537 C.3 1 LGD 0.1167
31 N5 4.2715 2.7942 -1.3067 N.4 1 LGD -0.7479
32 C20 3.7386 4.8024 -2.5942 C.3 1 LGD -0.1340
33 C21 4.5527 1.3482 -1.4202 C.3 1 LGD 0.0730
34 H1 -0.1848 -0.5481 -0.2138 H 1 LGD 0.1307
35 H2 -1.0937 0.5832 2.4793 H 1 LGD 0.0694
36 H3 1.8046 -1.4194 0.8869 H 1 LGD 0.1549
37 H4 -0.7636 2.8227 1.5476 H 1 LGD 0.1101
38 H5 -2.9262 0.6507 1.5016 H 1 LGD 0.4718
39 H6 0.5240 -3.0843 0.5919 H 1 LGD 0.0950
40 H7 3.0064 0.6692 1.6712 H 1 LGD 0.0986
41 H8 2.1829 0.8578 0.1271 H 1 LGD 0.0986
42 H9 2.2121 -1.0596 3.1944 H 1 LGD 0.4774
43 H10 0.7634 -1.8199 2.9984 H 1 LGD 0.4774
44 H11 1.0862 1.7659 2.8389 H 1 LGD 0.1221
45 H12 -0.7750 -4.0425 2.5569 H 1 LGD 0.0845
46 H13 -0.2768 4.2048 -0.0681 H 1 LGD 0.1098
47 H14 1.4755 3.9234 2.0512 H 1 LGD 0.4809
48 H15 2.8865 3.0900 1.9553 H 1 LGD 0.4809
49 H16 -3.0047 -3.3097 2.0830 H 1 LGD 0.0901
50 H17 -0.5235 -5.3285 0.0569 H 1 LGD 0.4568
51 H18 -2.8910 -1.9055 -0.1760 H 1 LGD 0.0915
52 H19 -2.9587 -2.8168 -1.6946 H 1 LGD 0.0915
53 H20 -0.8957 4.7053 -2.3635 H 1 LGD 0.1690
54 H21 -2.7411 -6.2026 1.8353 H 1 LGD 0.4849
55 H22 1.8917 1.8632 -1.9816 H 1 LGD 0.0467
56 H23 -0.4752 1.7540 -3.0832 H 1 LGD 0.1040
57 H24 -0.9492 3.0564 -4.1784 H 1 LGD 0.1040
58 H25 -2.2261 2.2609 -1.4116 H 1 LGD 0.4794
59 H26 -2.8364 3.2618 -2.5744 H 1 LGD 0.4794
60 H27 -2.1320 -5.5713 -1.0380 H 1 LGD 0.0842
61 H28 -3.6057 -6.2043 -0.2767 H 1 LGD 0.0842
62 H29 -3.7086 -5.2072 -1.7342 H 1 LGD 0.0842
63 H30 -4.7706 -3.0581 0.8963 H 1 LGD 0.4093
64 H31 -3.5241 -4.4143 4.0464 H 1 LGD 0.1127
65 H32 -3.4651 -6.1919 4.1291 H 1 LGD 0.1127
66 H33 -1.9649 -5.2634 3.8989 H 1 LGD 0.1127
67 H34 1.2234 4.1764 -3.8935 H 1 LGD 0.1224
68 H35 1.5072 2.4953 -4.3497 H 1 LGD 0.1224
69 H36 3.8438 2.7860 -3.3559 H 1 LGD 0.1618
70 H37 3.7823 2.9928 -0.4486 H 1 LGD 0.4446
71 H38 3.2242 5.2176 -3.4688 H 1 LGD 0.1034
72 H39 3.4064 5.3537 -1.7055 H 1 LGD 0.1034
73 H40 4.8110 4.9944 -2.7257 H 1 LGD 0.1034
74 H41 5.1399 1.1605 -2.3213 H 1 LGD 0.1147
75 H42 5.1191 1.0156 -0.5481 H 1 LGD 0.1147
76 H43 3.6179 0.7886 -1.4791 H 1 LGD 0.1147
77 H44 0.7991 -0.2263 3.3784 H 1 LGD 0.4774
78 H45 1.9927 3.3925 0.5873 H 1 LGD 0.4809
79 H46 -4.1982 -5.4567 1.9890 H 1 LGD 0.4849
80 H47 -2.6430 3.8064 -1.0325 H 1 LGD 0.4794
81 H48 5.1550 3.2874 -1.2925 H 1 LGD 0.4446
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1