@COMMENT
LIGANDBOX_ID = D08013-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-05
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.2162 0.1229 -1.7967 C.3 1 LGD 0.1055
2 C2 0.1812 -0.1420 -0.6657 C.3 1 LGD 0.1200
3 O1 1.4137 1.5528 -1.8297 O.3 1 LGD -0.4814
4 C3 0.7375 -0.3513 -3.1979 C.3 1 LGD 0.0998
5 C4 -0.4853 -1.5541 -0.6965 C.3 1 LGD 0.0940
6 O2 0.8035 0.0922 0.5998 O.3 1 LGD -0.6047
7 C5 2.5716 2.0568 -2.5246 C.3 1 LGD 0.2904
8 C6 0.2460 -1.8158 -3.1488 C.3 1 LGD -0.1371
9 N1 -0.3567 0.5188 -3.6796 N.4 1 LGD -0.8249
10 O3 -1.7157 -1.5062 0.0670 O.3 1 LGD -0.4515
11 C7 -0.8993 -1.9873 -2.1253 C.3 1 LGD 0.1113
12 C8 2.3564 3.5717 -2.7689 C.3 1 LGD 0.1264
13 O4 3.7481 1.8797 -1.6999 O.3 1 LGD -0.3964
14 C9 -1.6370 -1.6389 1.5002 C.3 1 LGD 0.3554
15 N2 -1.3344 -3.3953 -2.0946 N.4 1 LGD -0.8145
16 C10 2.3177 4.3387 -1.4101 C.3 1 LGD 0.0951
17 O5 3.3760 4.0884 -3.6245 O.3 1 LGD -0.5459
18 C11 3.6747 2.4558 -0.3712 C.3 1 LGD 0.1132
19 O6 -2.3534 -2.8352 1.8733 O.3 1 LGD -0.4605
20 C12 -2.3637 -0.4298 2.1504 C.3 1 LGD 0.0756
21 C13 3.5283 4.0006 -0.4757 C.3 1 LGD 0.1054
22 N3 2.1999 5.7994 -1.6106 N.4 1 LGD -0.7318
23 C14 -2.3741 -3.1298 3.2923 C.3 1 LGD 0.1314
24 C15 -2.3807 -0.5971 3.6836 C.3 1 LGD -0.1032
25 N4 -1.7090 0.8463 1.8070 N.4 1 LGD -0.8157
26 C16 4.8760 4.6396 -0.9251 C.3 1 LGD -0.1455
27 O7 3.2258 4.5099 0.8222 O.3 1 LGD -0.6150
28 C17 0.8495 6.1758 -2.0766 C.3 1 LGD 0.0900
29 C18 -3.0365 -1.9438 4.0539 C.3 1 LGD -0.1006
30 C19 -3.1293 -4.4807 3.5131 C.3 1 LGD 0.1291
31 N5 -2.3776 -5.5858 2.8846 N.4 1 LGD -0.7476
32 C20 -4.5612 -4.4982 2.9146 C.3 1 LGD -0.1339
33 C21 -1.2151 -5.9860 3.7032 C.3 1 LGD 0.0769
34 H1 2.1565 -0.3879 -1.5486 H 1 LGD 0.1315
35 H2 -0.6283 0.5870 -0.8003 H 1 LGD 0.0701
36 H3 1.5716 -0.2766 -3.9002 H 1 LGD 0.1712
37 H4 0.2042 -2.3018 -0.2816 H 1 LGD 0.0963
38 H5 1.7096 -0.2628 0.5582 H 1 LGD 0.4713
39 H6 2.6987 1.5381 -3.4822 H 1 LGD 0.1109
40 H7 -0.0941 -2.1238 -4.1462 H 1 LGD 0.1341
41 H8 1.0857 -2.4724 -2.8843 H 1 LGD 0.1341
42 H9 -0.6323 0.2495 -4.6144 H 1 LGD 0.4739
43 H10 -0.0387 1.4783 -3.6907 H 1 LGD 0.4739
44 H11 -1.7452 -1.3735 -2.4408 H 1 LGD 0.1123
45 H12 1.3855 3.6995 -3.2633 H 1 LGD 0.0792
46 H13 -0.5942 -1.7036 1.8337 H 1 LGD 0.0796
47 H14 -2.0743 -3.4953 -1.4124 H 1 LGD 0.4859
48 H15 -1.6808 -3.6728 -3.0027 H 1 LGD 0.4859
49 H16 1.4198 4.0124 -0.8820 H 1 LGD 0.0935
50 H17 4.1944 3.5942 -3.4374 H 1 LGD 0.4611
51 H18 2.8237 2.0366 0.1801 H 1 LGD 0.0882
52 H19 4.5872 2.2086 0.1861 H 1 LGD 0.0882
53 H20 -3.3925 -0.4073 1.7841 H 1 LGD 0.1500
54 H21 2.8930 6.1003 -2.2830 H 1 LGD 0.4849
55 H22 -1.3434 -3.2338 3.6543 H 1 LGD 0.0701
56 H23 -1.3558 -0.5651 4.0774 H 1 LGD 0.1035
57 H24 -2.9347 0.2280 4.1498 H 1 LGD 0.1035
58 H25 -0.7387 0.8232 2.0923 H 1 LGD 0.4672
59 H26 -2.1786 1.6149 2.2652 H 1 LGD 0.4672
60 H27 5.2408 4.2122 -1.8655 H 1 LGD 0.0843
61 H28 4.7846 5.7250 -1.0569 H 1 LGD 0.0843
62 H29 5.6558 4.4622 -0.1733 H 1 LGD 0.0843
63 H30 4.0614 4.5766 1.3178 H 1 LGD 0.4737
64 H31 0.1047 5.8333 -1.3555 H 1 LGD 0.1090
65 H32 0.7839 7.2613 -2.1734 H 1 LGD 0.1090
66 H33 0.6515 5.7164 -3.0468 H 1 LGD 0.1090
67 H34 -4.1056 -1.8819 3.8188 H 1 LGD 0.1182
68 H35 -2.9574 -2.1076 5.1366 H 1 LGD 0.1182
69 H36 -3.2021 -4.6787 4.5850 H 1 LGD 0.1560
70 H37 -2.0728 -5.2976 1.9649 H 1 LGD 0.4564
71 H38 -5.2160 -3.7752 3.4146 H 1 LGD 0.0926
72 H39 -4.5524 -4.2705 1.8411 H 1 LGD 0.0926
73 H40 -5.0184 -5.4872 3.0442 H 1 LGD 0.0926
74 H41 -1.5542 -6.2880 4.6962 H 1 LGD 0.1182
75 H42 -0.7055 -6.8261 3.2276 H 1 LGD 0.1182
76 H43 -0.5205 -5.1497 3.7972 H 1 LGD 0.1182
77 H44 -1.1523 0.4524 -3.0617 H 1 LGD 0.4739
78 H45 -0.5625 -3.9930 -1.8348 H 1 LGD 0.4859
79 H46 2.3799 6.2558 -0.7256 H 1 LGD 0.4849
80 H47 -1.7410 0.9795 0.8062 H 1 LGD 0.4672
81 H48 -2.9908 -6.3843 2.7874 H 1 LGD 0.4564
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1