@COMMENT
LIGANDBOX_ID = D08013-06
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-06
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.1962 -0.7254 -1.3590 C.3 1 LGD 0.1341
2 C2 0.4699 0.4852 -0.7116 C.3 1 LGD 0.1434
3 O1 0.6077 -1.9262 -0.8089 O.3 1 LGD -0.4746
4 C3 2.7218 -0.7296 -1.0735 C.3 1 LGD 0.0971
5 C4 1.1373 1.8563 -1.0723 C.3 1 LGD 0.0885
6 O2 -0.8979 0.4543 -1.1159 O.3 1 LGD -0.5448
7 C5 0.8897 -3.1631 -1.4976 C.3 1 LGD 0.2891
8 C6 3.3603 0.6146 -1.4902 C.3 1 LGD -0.1360
9 N1 2.9625 -0.9714 0.3646 N.4 1 LGD -0.8253
10 O3 0.6120 2.9374 -0.2498 O.3 1 LGD -0.5195
11 C7 2.6690 1.8203 -0.8081 C.3 1 LGD 0.1084
12 C8 0.3199 -4.3332 -0.6557 C.3 1 LGD 0.1293
13 O4 0.2456 -3.1626 -2.7948 O.3 1 LGD -0.3990
14 C9 -0.7557 3.3526 -0.4645 C.3 1 LGD 0.3265
15 N2 3.2908 3.0647 -1.2959 N.4 1 LGD -0.8149
16 C10 -1.2404 -4.2792 -0.6236 C.3 1 LGD 0.0500
17 O5 0.7773 -5.5824 -1.1750 O.3 1 LGD -0.5489
18 C11 -1.1867 -2.9440 -2.7862 C.3 1 LGD 0.1075
19 O6 -1.6479 2.6462 0.4338 O.3 1 LGD -0.4030
20 C12 -0.9324 4.8814 -0.2387 C.3 1 LGD 0.0892
21 C13 -1.8832 -4.1168 -2.0422 C.3 1 LGD 0.1040
22 N3 -1.8079 -5.4552 0.0710 N.4 1 LGD -0.7309
23 C14 -1.5932 2.8871 1.8671 C.3 1 LGD 0.1333
24 C15 -0.7870 5.2797 1.2467 C.3 1 LGD -0.1055
25 N4 0.0372 5.6487 -1.0450 N.4 1 LGD -0.8177
26 C16 -1.8300 -5.4058 -2.9158 C.3 1 LGD -0.0980
27 O7 -3.2593 -3.7857 -1.8611 O.3 1 LGD -0.5446
28 C17 -1.6144 -5.3682 1.5324 C.3 1 LGD 0.0906
29 C18 -1.6966 4.4135 2.1515 C.3 1 LGD -0.0989
30 C19 -0.4181 2.0865 2.5477 C.3 1 LGD 0.0957
31 N5 -0.9064 1.4689 3.8001 N.4 1 LGD -0.7502
32 C20 0.8508 2.8908 2.9361 C.3 1 LGD -0.1358
33 C21 -1.7023 0.2515 3.5376 C.3 1 LGD 0.0830
34 H1 1.0338 -0.6866 -2.4448 H 1 LGD 0.1485
35 H2 0.5295 0.3555 0.3744 H 1 LGD 0.0157
36 H3 3.1872 -1.5380 -1.6428 H 1 LGD 0.1754
37 H4 0.9654 2.0715 -2.1355 H 1 LGD 0.1067
38 H5 -1.3794 1.0950 -0.5593 H 1 LGD 0.4466
39 H6 1.9722 -3.2875 -1.6188 H 1 LGD 0.1030
40 H7 4.4298 0.6067 -1.2418 H 1 LGD 0.1355
41 H8 3.2926 0.7185 -2.5815 H 1 LGD 0.1355
42 H9 3.9548 -1.0382 0.5470 H 1 LGD 0.4696
43 H10 2.5166 -1.8382 0.6339 H 1 LGD 0.4696
44 H11 2.8319 1.7534 0.2694 H 1 LGD 0.0989
45 H12 0.6886 -4.2234 0.3716 H 1 LGD 0.0788
46 H13 -1.0377 3.1264 -1.5002 H 1 LGD 0.1317
47 H14 2.8681 3.8541 -0.8306 H 1 LGD 0.4809
48 H15 4.2817 3.0571 -1.0953 H 1 LGD 0.4809
49 H16 -1.5218 -3.3939 -0.0503 H 1 LGD 0.0790
50 H17 0.8510 -5.4885 -2.1418 H 1 LGD 0.4613
51 H18 -1.4246 -1.9911 -2.2972 H 1 LGD 0.0989
52 H19 -1.5563 -2.8910 -3.8183 H 1 LGD 0.0989
53 H20 -1.9416 5.1491 -0.5611 H 1 LGD 0.1781
54 H21 -1.3671 -6.2932 -0.2853 H 1 LGD 0.4870
55 H22 -2.5175 2.4609 2.2757 H 1 LGD 0.1241
56 H23 0.2593 5.1969 1.5595 H 1 LGD 0.0962
57 H24 -1.0604 6.3356 1.3704 H 1 LGD 0.0962
58 H25 0.9749 5.4189 -0.7525 H 1 LGD 0.4708
59 H26 -0.1167 6.6391 -0.9097 H 1 LGD 0.4708
60 H27 -0.8059 -5.6689 -3.2021 H 1 LGD 0.0854
61 H28 -2.2713 -6.2655 -2.3967 H 1 LGD 0.0854
62 H29 -2.3927 -5.2595 -3.8470 H 1 LGD 0.0854
63 H30 -3.3039 -2.9524 -1.3598 H 1 LGD 0.4071
64 H31 -2.0853 -4.4586 1.9106 H 1 LGD 0.1059
65 H32 -2.0688 -6.2359 2.0146 H 1 LGD 0.1059
66 H33 -0.5478 -5.3465 1.7634 H 1 LGD 0.1059
67 H34 -2.7380 4.7179 1.9826 H 1 LGD 0.1209
68 H35 -1.4943 4.6221 3.2095 H 1 LGD 0.1209
69 H36 -0.1200 1.2792 1.8799 H 1 LGD 0.0701
70 H37 -1.4637 2.1381 4.3145 H 1 LGD 0.4776
71 H38 1.3577 3.3115 2.0632 H 1 LGD 0.0807
72 H39 0.6194 3.7055 3.6330 H 1 LGD 0.0807
73 H40 1.5757 2.2328 3.4316 H 1 LGD 0.0807
74 H41 -1.0911 -0.4787 3.0039 H 1 LGD 0.1136
75 H42 -2.0312 -0.1795 4.4854 H 1 LGD 0.1136
76 H43 -2.5771 0.5007 2.9344 H 1 LGD 0.1136
77 H44 2.5677 -0.2226 0.9138 H 1 LGD 0.4696
78 H45 3.1579 3.1513 -2.2940 H 1 LGD 0.4809
79 H46 -2.7990 -5.4981 -0.1296 H 1 LGD 0.4870
80 H47 -0.0763 5.4312 -2.0254 H 1 LGD 0.4708
81 H48 -0.1136 1.2128 4.3732 H 1 LGD 0.4776
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1