@COMMENT
LIGANDBOX_ID = D08013-07
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-07
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.7185 -0.5363 -1.0889 C.3 1 LGD 0.1313
2 C2 0.9425 0.6834 -0.5228 C.3 1 LGD 0.1321
3 O1 1.1101 -1.7258 -0.5367 O.3 1 LGD -0.4882
4 C3 3.2288 -0.5209 -0.7299 C.3 1 LGD 0.1007
5 C4 1.6281 2.0513 -0.8388 C.3 1 LGD 0.0887
6 O2 -0.3815 0.6498 -1.0486 O.3 1 LGD -0.5766
7 C5 1.3797 -2.9672 -1.2225 C.3 1 LGD 0.2928
8 C6 3.8742 0.8247 -1.1339 C.3 1 LGD -0.1364
9 N1 3.4037 -0.7396 0.7214 N.4 1 LGD -0.8259
10 O3 1.0593 3.1114 -0.0252 O.3 1 LGD -0.4713
11 C7 3.1404 2.0258 -0.4917 C.3 1 LGD 0.1136
12 C8 0.7988 -4.1300 -0.3799 C.3 1 LGD 0.1262
13 O4 0.7275 -2.9643 -2.5153 O.3 1 LGD -0.3974
14 C9 -0.2219 3.6711 -0.3950 C.3 1 LGD 0.3260
15 N2 3.7665 3.2819 -0.9436 N.4 1 LGD -0.8143
16 C10 -0.7595 -4.0434 -0.3260 C.3 1 LGD 0.0821
17 O5 1.2226 -5.3849 -0.9141 O.3 1 LGD -0.5464
18 C11 -0.6998 -2.7139 -2.4967 C.3 1 LGD 0.1291
19 O6 -1.2973 2.8747 0.1606 O.3 1 LGD -0.4703
20 C12 -0.3289 5.1099 0.1849 C.3 1 LGD 0.0987
21 C13 -1.4209 -3.8602 -1.7348 C.3 1 LGD 0.1026
22 N3 -1.3414 -5.2102 0.3730 N.4 1 LGD -0.7339
23 C14 -1.2948 2.7095 1.5996 C.3 1 LGD 0.1234
24 C15 -0.4109 5.0955 1.7353 C.3 1 LGD -0.1074
25 N4 -1.5431 5.7591 -0.3529 N.4 1 LGD -0.8181
26 C16 -1.4319 -5.1509 -2.6071 C.3 1 LGD -0.1506
27 O7 -2.7777 -3.4722 -1.5249 O.3 1 LGD -0.6216
28 C17 -1.0966 -5.1540 1.8282 C.3 1 LGD 0.0915
29 C18 -1.4858 4.1050 2.2472 C.3 1 LGD -0.1134
30 C19 -2.3973 1.6760 1.9981 C.3 1 LGD 0.1250
31 N5 -2.0215 0.3230 1.5300 N.4 1 LGD -0.7586
32 C20 -3.7937 2.0031 1.4103 C.3 1 LGD -0.1349
33 C21 -1.0121 -0.2992 2.4108 C.3 1 LGD 0.0887
34 H1 1.6137 -0.5298 -2.1824 H 1 LGD 0.1490
35 H2 0.9037 0.5804 0.5684 H 1 LGD 0.0226
36 H3 3.7284 -1.3326 -1.2646 H 1 LGD 0.1727
37 H4 1.5123 2.2814 -1.9065 H 1 LGD 0.1110
38 H5 -0.7758 1.5254 -0.8734 H 1 LGD 0.4408
39 H6 2.4606 -3.1015 -1.3480 H 1 LGD 0.1130
40 H7 4.9317 0.8304 -0.8388 H 1 LGD 0.1373
41 H8 3.8521 0.9193 -2.2279 H 1 LGD 0.1373
42 H9 4.3872 -0.7875 0.9509 H 1 LGD 0.4720
43 H10 2.9599 -1.6098 0.9821 H 1 LGD 0.4720
44 H11 3.2445 1.9608 0.5933 H 1 LGD 0.1070
45 H12 1.1850 -4.0343 0.6424 H 1 LGD 0.0831
46 H13 -0.3075 3.7081 -1.4879 H 1 LGD 0.1234
47 H14 3.2850 4.0631 -0.5195 H 1 LGD 0.4875
48 H15 4.7389 3.3049 -0.6688 H 1 LGD 0.4875
49 H16 -1.0139 -3.1546 0.2544 H 1 LGD 0.0743
50 H17 1.3279 -5.2735 -1.8762 H 1 LGD 0.4618
51 H18 -0.9138 -1.7524 -2.0153 H 1 LGD 0.0967
52 H19 -1.0757 -2.6603 -3.5263 H 1 LGD 0.0967
53 H20 0.5438 5.6896 -0.1245 H 1 LGD 0.1372
54 H21 -0.9407 -6.0569 -0.0092 H 1 LGD 0.4824
55 H22 -0.3237 2.3171 1.9258 H 1 LGD 0.0542
56 H23 0.5664 4.8042 2.1422 H 1 LGD 0.1199
57 H24 -0.6180 6.1047 2.1146 H 1 LGD 0.1199
58 H25 -2.3567 5.2121 -0.1078 H 1 LGD 0.4839
59 H26 -1.4851 5.8306 -1.3595 H 1 LGD 0.4839
60 H27 -0.4211 -5.4630 -2.8917 H 1 LGD 0.0878
61 H28 -1.9130 -5.9885 -2.0870 H 1 LGD 0.0878
62 H29 -1.9844 -4.9790 -3.5401 H 1 LGD 0.0878
63 H30 -3.3421 -4.0755 -2.0404 H 1 LGD 0.4720
64 H31 -1.5220 -4.2350 2.2358 H 1 LGD 0.1078
65 H32 -1.5660 -6.0133 2.3112 H 1 LGD 0.1078
66 H33 -0.0229 -5.1749 2.0236 H 1 LGD 0.1078
67 H34 -2.4822 4.5027 2.0202 H 1 LGD 0.1096
68 H35 -1.4183 4.0200 3.3396 H 1 LGD 0.1096
69 H36 -2.4810 1.6497 3.0870 H 1 LGD 0.1500
70 H37 -1.6664 0.3765 0.5840 H 1 LGD 0.4685
71 H38 -4.1628 2.9709 1.7695 H 1 LGD 0.0990
72 H39 -3.7741 2.0261 0.3134 H 1 LGD 0.0990
73 H40 -4.5237 1.2431 1.7163 H 1 LGD 0.0990
74 H41 -1.4123 -0.3865 3.4228 H 1 LGD 0.0993
75 H42 -0.7629 -1.2931 2.0339 H 1 LGD 0.0993
76 H43 -0.1096 0.3137 2.4316 H 1 LGD 0.0993
77 H44 2.9731 0.0111 1.2411 H 1 LGD 0.4720
78 H45 3.7026 3.3613 -1.9488 H 1 LGD 0.4875
79 H46 -2.3394 -5.2164 0.2094 H 1 LGD 0.4824
80 H47 -1.6384 6.6873 0.0364 H 1 LGD 0.4839
81 H48 -2.8467 -0.2616 1.5268 H 1 LGD 0.4685
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1