@COMMENT
LIGANDBOX_ID = D08013-08
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-08
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -1.7647 0.6262 1.0170 C.3 1 LGD 0.1348
2 C2 -0.3125 0.0902 1.1629 C.3 1 LGD 0.1396
3 O1 -1.9851 0.9172 -0.3823 O.3 1 LGD -0.4730
4 C3 -2.0273 1.9114 1.8464 C.3 1 LGD 0.0988
5 C4 0.1611 -0.0274 2.6490 C.3 1 LGD 0.0903
6 O2 -0.2407 -1.1782 0.5180 O.3 1 LGD -0.5562
7 C5 -3.3606 1.0695 -0.7937 C.3 1 LGD 0.2885
8 C6 -1.6351 1.6962 3.3237 C.3 1 LGD -0.1352
9 N1 -1.2559 3.0402 1.2846 N.4 1 LGD -0.8256
10 O3 1.6042 -0.1847 2.7173 O.3 1 LGD -0.5114
11 C7 -0.1595 1.2572 3.4623 C.3 1 LGD 0.1070
12 C8 -3.3903 1.6237 -2.2407 C.3 1 LGD 0.1292
13 O4 -4.0206 -0.2185 -0.7731 O.3 1 LGD -0.3973
14 C9 2.1954 -1.4678 2.3899 C.3 1 LGD 0.3441
15 N2 0.1385 1.0299 4.8880 N.4 1 LGD -0.8140
16 C10 -2.8277 0.5736 -3.2505 C.3 1 LGD 0.0485
17 O5 -4.7214 2.0048 -2.5918 O.3 1 LGD -0.5493
18 C11 -3.3958 -1.2532 -1.5717 C.3 1 LGD 0.1166
19 O6 2.4275 -1.5714 0.9632 O.3 1 LGD -0.4584
20 C12 3.5754 -1.5933 3.0947 C.3 1 LGD 0.0861
21 C13 -3.4521 -0.8523 -3.0719 C.3 1 LGD 0.1035
22 N3 -2.9830 1.0391 -4.6466 N.4 1 LGD -0.7355
23 C14 3.2697 -0.5518 0.3649 C.3 1 LGD 0.1234
24 C15 4.5624 -0.5197 2.5771 C.3 1 LGD -0.1026
25 N4 3.4341 -1.4604 4.5578 N.4 1 LGD -0.8170
26 C16 -4.9130 -0.9767 -3.5981 C.3 1 LGD -0.1031
27 O7 -2.6560 -1.7751 -3.8136 O.3 1 LGD -0.5422
28 C17 -2.0250 2.1155 -4.9712 C.3 1 LGD 0.0890
29 C18 4.6712 -0.5805 1.0380 C.3 1 LGD -0.1096
30 C19 3.3338 -0.7786 -1.1827 C.3 1 LGD 0.1337
31 N5 3.2468 -2.2095 -1.5648 N.4 1 LGD -0.7434
32 C20 2.1674 -0.0580 -1.8980 C.3 1 LGD -0.1441
33 C21 4.4867 -2.9720 -1.3180 C.3 1 LGD 0.0830
34 H1 -2.4548 -0.1600 1.3522 H 1 LGD 0.1464
35 H2 0.3579 0.7947 0.6540 H 1 LGD 0.0391
36 H3 -3.0905 2.1577 1.7922 H 1 LGD 0.1717
37 H4 -0.3403 -0.8817 3.1233 H 1 LGD 0.1053
38 H5 0.6881 -1.4702 0.5793 H 1 LGD 0.4327
39 H6 -3.8791 1.7650 -0.1235 H 1 LGD 0.1061
40 H7 -1.8055 2.6219 3.8889 H 1 LGD 0.1349
41 H8 -2.2923 0.9334 3.7626 H 1 LGD 0.1349
42 H9 -1.4627 3.8912 1.7897 H 1 LGD 0.4727
43 H10 -1.5059 3.1620 0.3125 H 1 LGD 0.4727
44 H11 0.4807 2.0643 3.1005 H 1 LGD 0.1093
45 H12 -2.7492 2.5132 -2.2768 H 1 LGD 0.0833
46 H13 1.5365 -2.2797 2.7211 H 1 LGD 0.1294
47 H14 1.1101 0.7778 4.9888 H 1 LGD 0.4796
48 H15 -0.0391 1.8731 5.4167 H 1 LGD 0.4796
49 H16 -1.7586 0.4756 -3.0531 H 1 LGD 0.0778
50 H17 -5.3304 1.3968 -2.1353 H 1 LGD 0.4619
51 H18 -2.3546 -1.4016 -1.2592 H 1 LGD 0.0974
52 H19 -3.9266 -2.2022 -1.4232 H 1 LGD 0.0974
53 H20 3.9859 -2.5806 2.8698 H 1 LGD 0.1665
54 H21 -3.9291 1.3740 -4.7764 H 1 LGD 0.4847
55 H22 2.8353 0.4387 0.5523 H 1 LGD 0.0774
56 H23 4.2242 0.4806 2.8790 H 1 LGD 0.1021
57 H24 5.5535 -0.6715 3.0239 H 1 LGD 0.1021
58 H25 3.0737 -0.5443 4.7780 H 1 LGD 0.4727
59 H26 4.3375 -1.5725 4.9982 H 1 LGD 0.4727
60 H27 -5.6155 -0.3730 -3.0133 H 1 LGD 0.0858
61 H28 -4.9923 -0.6718 -4.6489 H 1 LGD 0.0858
62 H29 -5.2552 -2.0177 -3.5310 H 1 LGD 0.0858
63 H30 -1.7459 -1.4318 -3.8395 H 1 LGD 0.3904
64 H31 -1.0050 1.7577 -4.8182 H 1 LGD 0.1093
65 H32 -2.1493 2.4144 -6.0139 H 1 LGD 0.1093
66 H33 -2.2063 2.9779 -4.3271 H 1 LGD 0.1093
67 H34 5.2238 -1.4834 0.7602 H 1 LGD 0.1118
68 H35 5.2656 0.2705 0.6807 H 1 LGD 0.1118
69 H36 4.2694 -0.3638 -1.5645 H 1 LGD 0.1546
70 H37 3.0427 -2.2621 -2.5538 H 1 LGD 0.4645
71 H38 2.1525 1.0099 -1.6465 H 1 LGD 0.0786
72 H39 2.2737 -0.1426 -2.9869 H 1 LGD 0.0786
73 H40 1.1991 -0.4902 -1.6202 H 1 LGD 0.0786
74 H41 4.6415 -3.0871 -0.2446 H 1 LGD 0.1210
75 H42 4.3998 -3.9631 -1.7676 H 1 LGD 0.1210
76 H43 5.3376 -2.4495 -1.7594 H 1 LGD 0.1210
77 H44 -0.2664 2.8470 1.3392 H 1 LGD 0.4727
78 H45 -0.4409 0.2850 5.2494 H 1 LGD 0.4796
79 H46 -2.8287 0.2583 -5.2710 H 1 LGD 0.4847
80 H47 2.8069 -2.1690 4.9130 H 1 LGD 0.4727
81 H48 2.4836 -2.6406 -1.0607 H 1 LGD 0.4645
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1