@COMMENT
LIGANDBOX_ID = D08013-09
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-09
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.6460 -0.4916 -1.1668 C.3 1 LGD 0.1335
2 C2 0.8827 0.7165 -0.5630 C.3 1 LGD 0.1273
3 O1 1.0350 -1.6888 -0.6329 O.3 1 LGD -0.4904
4 C3 3.1618 -0.4969 -0.8335 C.3 1 LGD 0.0735
5 C4 1.5451 2.0921 -0.8968 C.3 1 LGD 0.0925
6 O2 -0.4541 0.6714 -1.0529 O.3 1 LGD -0.5743
7 C5 1.2929 -2.9227 -1.3359 C.3 1 LGD 0.2912
8 C6 3.8199 0.8719 -1.1504 C.3 1 LGD -0.1328
9 N1 3.3758 -0.8771 0.5788 N.4 1 LGD -0.8280
10 O3 0.9558 3.1628 -0.1058 O.3 1 LGD -0.5325
11 C7 3.0697 2.1070 -0.5820 C.3 1 LGD 0.1107
12 C8 0.7123 -4.0902 -0.4991 C.3 1 LGD 0.1264
13 O4 0.6308 -2.9024 -2.6235 O.3 1 LGD -0.3941
14 C9 -0.3312 3.7047 -0.4924 C.3 1 LGD 0.3352
15 N2 3.2888 2.2219 0.8745 N.4 1 LGD -0.8280
16 C10 -0.8452 -3.9962 -0.4342 C.3 1 LGD 0.0823
17 O5 1.1272 -5.3427 -1.0453 O.3 1 LGD -0.5459
18 C11 -0.7957 -2.6489 -2.5927 C.3 1 LGD 0.1279
19 O6 -1.3987 2.9082 0.0733 O.3 1 LGD -0.4319
20 C12 -0.4716 5.1507 0.0641 C.3 1 LGD 0.0924
21 C13 -1.5145 -3.8011 -1.8372 C.3 1 LGD 0.1028
22 N3 -1.4288 -5.1633 0.2626 N.4 1 LGD -0.7339
23 C14 -1.4061 2.7730 1.5154 C.3 1 LGD 0.1256
24 C15 -0.5214 5.1599 1.6133 C.3 1 LGD -0.1001
25 N4 0.6505 5.9918 -0.3985 N.4 1 LGD -0.8178
26 C16 -1.5322 -5.0849 -2.7196 C.3 1 LGD -0.1508
27 O7 -2.8696 -3.4133 -1.6163 O.3 1 LGD -0.6201
28 C17 -1.1825 -5.1097 1.7177 C.3 1 LGD 0.0919
29 C18 -1.6026 4.1830 2.1314 C.3 1 LGD -0.0956
30 C19 -2.5129 1.7476 1.9253 C.3 1 LGD 0.1271
31 N5 -2.1475 0.3890 1.4654 N.4 1 LGD -0.7594
32 C20 -3.9090 2.0770 1.3379 C.3 1 LGD -0.1341
33 C21 -1.1317 -0.2325 2.3388 C.3 1 LGD 0.0930
34 H1 1.5244 -0.4588 -2.2582 H 1 LGD 0.1573
35 H2 0.8772 0.6058 0.5281 H 1 LGD -0.0010
36 H3 3.6468 -1.2560 -1.4525 H 1 LGD 0.1776
37 H4 1.4184 2.3002 -1.9677 H 1 LGD 0.1423
38 H5 -0.8390 1.5566 -0.9060 H 1 LGD 0.4473
39 H6 2.3720 -3.0612 -1.4714 H 1 LGD 0.1085
40 H7 4.8639 0.8758 -0.8110 H 1 LGD 0.1548
41 H8 3.8632 0.9796 -2.2423 H 1 LGD 0.1548
42 H9 4.3592 -0.8311 0.8100 H 1 LGD 0.4656
43 H10 3.0562 -1.8274 0.7118 H 1 LGD 0.4656
44 H11 3.4999 3.0010 -1.0388 H 1 LGD 0.1635
45 H12 1.1050 -4.0043 0.5216 H 1 LGD 0.0785
46 H13 -0.4162 3.7227 -1.5859 H 1 LGD 0.1404
47 H14 4.2784 2.2205 1.0813 H 1 LGD 0.4674
48 H15 2.8905 3.0964 1.1890 H 1 LGD 0.4674
49 H16 -1.0913 -3.1093 0.1527 H 1 LGD 0.0749
50 H17 1.2163 -5.2276 -2.0087 H 1 LGD 0.4632
51 H18 -1.0040 -1.6917 -2.1004 H 1 LGD 0.0991
52 H19 -1.1785 -2.5845 -3.6191 H 1 LGD 0.0991
53 H20 -1.4067 5.5723 -0.3125 H 1 LGD 0.1783
54 H21 -1.0308 -6.0104 -0.1217 H 1 LGD 0.4835
55 H22 -0.4373 2.3869 1.8560 H 1 LGD 0.0256
56 H23 0.4558 4.8707 2.0224 H 1 LGD 0.0949
57 H24 -0.7343 6.1739 1.9761 H 1 LGD 0.0949
58 H25 1.5238 5.5901 -0.0887 H 1 LGD 0.4764
59 H26 0.5597 6.9248 -0.0195 H 1 LGD 0.4764
60 H27 -0.5238 -5.3941 -3.0155 H 1 LGD 0.0883
61 H28 -2.0081 -5.9269 -2.2017 H 1 LGD 0.0883
62 H29 -2.0929 -4.9062 -3.6464 H 1 LGD 0.0883
63 H30 -3.4369 -4.0027 -2.1446 H 1 LGD 0.4735
64 H31 -1.6066 -4.1908 2.1270 H 1 LGD 0.1073
65 H32 -1.6528 -5.9690 2.1999 H 1 LGD 0.1073
66 H33 -0.1088 -5.1321 1.9122 H 1 LGD 0.1073
67 H34 -2.5926 4.5793 1.8743 H 1 LGD 0.1226
68 H35 -1.5546 4.1225 3.2264 H 1 LGD 0.1226
69 H36 -2.5944 1.7300 3.0144 H 1 LGD 0.1465
70 H37 -1.8034 0.4340 0.5149 H 1 LGD 0.4703
71 H38 -4.2762 3.0457 1.6966 H 1 LGD 0.1042
72 H39 -3.8894 2.1000 0.2409 H 1 LGD 0.1042
73 H40 -4.6406 1.3186 1.6441 H 1 LGD 0.1042
74 H41 -1.5224 -0.3145 3.3549 H 1 LGD 0.0940
75 H42 -0.8895 -1.2288 1.9635 H 1 LGD 0.0940
76 H43 -0.2273 0.3776 2.3480 H 1 LGD 0.0940
77 H44 2.8403 -0.2872 1.1927 H 1 LGD 0.4656
78 H45 2.8234 1.4786 1.3661 H 1 LGD 0.4674
79 H46 -2.4271 -5.1667 0.1001 H 1 LGD 0.4835
80 H47 0.6505 6.0465 -1.4079 H 1 LGD 0.4764
81 H48 -2.9757 -0.1913 1.4746 H 1 LGD 0.4703
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1