@COMMENT
LIGANDBOX_ID = D08013-10
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-10
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.6495 -0.5198 -1.0209 C.3 1 LGD 0.1471
2 C2 0.8511 0.6958 -0.4567 C.3 1 LGD 0.1476
3 O1 1.0337 -1.7079 -0.4578 O.3 1 LGD -0.4616
4 C3 3.1584 -0.4501 -0.6275 C.3 1 LGD 0.0973
5 C4 1.5139 2.0826 -0.7566 C.3 1 LGD 0.0937
6 O2 -0.4733 0.6491 -0.9817 O.3 1 LGD -0.5850
7 C5 1.2210 -2.9748 -1.1327 C.3 1 LGD 0.2993
8 C6 3.7718 0.9011 -1.0489 C.3 1 LGD -0.1409
9 N1 3.9569 -1.5068 -1.2794 N.4 1 LGD -0.8227
10 O3 0.9260 3.1325 0.0602 O.3 1 LGD -0.5103
11 C7 3.0218 2.0765 -0.3966 C.3 1 LGD 0.1272
12 C8 0.5787 -4.0979 -0.2828 C.3 1 LGD 0.1277
13 O4 0.5946 -2.9506 -2.4358 O.3 1 LGD -0.4114
14 C9 -0.3691 3.6690 -0.3050 C.3 1 LGD 0.3301
15 N2 3.6449 3.3386 -0.8350 N.4 1 LGD -0.8163
16 C10 -0.9799 -3.9870 -0.2739 C.3 1 LGD 0.0474
17 O5 0.9922 -5.3741 -0.7747 O.3 1 LGD -0.5485
18 C11 -0.8243 -2.6711 -2.4474 C.3 1 LGD 0.1451
19 O6 -1.4236 2.8532 0.2584 O.3 1 LGD -0.4343
20 C12 -0.5215 5.1089 0.2691 C.3 1 LGD 0.0903
21 C13 -1.5875 -3.8050 -1.7101 C.3 1 LGD 0.1037
22 N3 -1.5744 -5.1526 0.4236 N.4 1 LGD -0.7394
23 C14 -1.4277 2.7115 1.7005 C.3 1 LGD 0.1204
24 C15 -0.5651 5.1038 1.8174 C.3 1 LGD -0.1029
25 N4 0.5881 5.9726 -0.1801 N.4 1 LGD -0.8189
26 C16 -1.5727 -5.1036 -2.5721 C.3 1 LGD -0.1308
27 O7 -2.9458 -3.3860 -1.5789 O.3 1 LGD -0.5558
28 C17 -1.3319 -5.0945 1.8800 C.3 1 LGD 0.0886
29 C18 -1.6363 4.1149 2.3278 C.3 1 LGD -0.0925
30 C19 -2.5282 1.6798 2.1067 C.3 1 LGD 0.1269
31 N5 -2.1518 0.3242 1.6479 N.4 1 LGD -0.7586
32 C20 -3.9252 2.0014 1.5161 C.3 1 LGD -0.1347
33 C21 -1.1373 -0.2887 2.5293 C.3 1 LGD 0.0860
34 H1 1.5528 -0.5200 -2.1150 H 1 LGD 0.1144
35 H2 0.8097 0.5868 0.6341 H 1 LGD 0.0553
36 H3 3.2445 -0.5572 0.4568 H 1 LGD 0.1384
37 H4 1.4028 2.3185 -1.8235 H 1 LGD 0.0976
38 H5 -0.8910 1.5049 -0.7668 H 1 LGD 0.4457
39 H6 2.2844 -3.1955 -1.2464 H 1 LGD 0.0700
40 H7 4.8275 0.9332 -0.7487 H 1 LGD 0.1138
41 H8 3.7434 1.0004 -2.1427 H 1 LGD 0.1138
42 H9 3.6798 -2.4120 -0.9296 H 1 LGD 0.4856
43 H10 4.9375 -1.3739 -1.0723 H 1 LGD 0.4856
44 H11 3.1203 1.9975 0.6884 H 1 LGD 0.1443
45 H12 0.9381 -3.9855 0.7476 H 1 LGD 0.1026
46 H13 -0.4649 3.6994 -1.3972 H 1 LGD 0.1264
47 H14 3.1786 4.1123 -0.3865 H 1 LGD 0.4787
48 H15 4.6219 3.3485 -0.5751 H 1 LGD 0.4787
49 H16 -1.2411 -3.0921 0.2939 H 1 LGD 0.0773
50 H17 1.0374 -5.3144 -1.7459 H 1 LGD 0.4578
51 H18 -1.0282 -1.7088 -1.9638 H 1 LGD 0.1043
52 H19 -1.1769 -2.6047 -3.4847 H 1 LGD 0.1043
53 H20 -1.4621 5.5240 -0.1009 H 1 LGD 0.1761
54 H21 -1.1652 -5.9993 0.0493 H 1 LGD 0.4795
55 H22 -0.4557 2.3305 2.0379 H 1 LGD 0.0520
56 H23 0.4155 4.8172 2.2204 H 1 LGD 0.1012
57 H24 -0.7842 6.1126 2.1909 H 1 LGD 0.1012
58 H25 1.4588 5.6095 0.1776 H 1 LGD 0.4706
59 H26 0.4542 6.9106 0.1736 H 1 LGD 0.4706
60 H27 -0.5546 -5.4060 -2.8422 H 1 LGD 0.0848
61 H28 -2.0494 -5.9433 -2.0517 H 1 LGD 0.0848
62 H29 -2.1160 -4.9462 -3.5129 H 1 LGD 0.0848
63 H30 -3.3490 -3.8618 -0.8342 H 1 LGD 0.4086
64 H31 -1.7314 -4.1618 2.2828 H 1 LGD 0.1120
65 H32 -1.8241 -5.9383 2.3677 H 1 LGD 0.1120
66 H33 -0.2594 -5.1439 2.0779 H 1 LGD 0.1120
67 H34 -2.6294 4.5061 2.0753 H 1 LGD 0.1209
68 H35 -1.5860 4.0465 3.4223 H 1 LGD 0.1209
69 H36 -2.6121 1.6623 3.1958 H 1 LGD 0.1488
70 H37 -1.8016 0.3712 0.6999 H 1 LGD 0.4631
71 H38 -4.2944 2.9731 1.8644 H 1 LGD 0.1012
72 H39 -3.9053 2.0135 0.4189 H 1 LGD 0.1012
73 H40 -4.6558 1.2453 1.8301 H 1 LGD 0.1012
74 H41 -1.5252 -0.3488 3.5482 H 1 LGD 0.1022
75 H42 -0.9039 -1.2938 2.1726 H 1 LGD 0.1022
76 H43 -0.2278 0.3142 2.5243 H 1 LGD 0.1022
77 H44 3.8250 -1.4777 -2.2812 H 1 LGD 0.4856
78 H45 3.5676 3.4346 -1.8379 H 1 LGD 0.4787
79 H46 -2.5704 -5.1797 0.2617 H 1 LGD 0.4795
80 H47 0.6189 6.0041 -1.1897 H 1 LGD 0.4706
81 H48 -2.9770 -0.2601 1.6551 H 1 LGD 0.4631
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1