@COMMENT
LIGANDBOX_ID = D08013-11
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-11
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -0.6494 1.0118 0.7315 C.3 1 LGD 0.1322
2 C2 0.6988 0.3130 0.4105 C.3 1 LGD 0.1363
3 O1 -1.5022 0.8640 -0.4281 O.3 1 LGD -0.4376
4 C3 -0.4874 2.5166 1.0654 C.3 1 LGD 0.1003
5 C4 1.7822 0.5498 1.5157 C.3 1 LGD 0.0921
6 O2 0.4384 -1.0784 0.2368 O.3 1 LGD -0.5722
7 C5 -2.9143 1.1101 -0.2537 C.3 1 LGD 0.3103
8 C6 0.5312 2.7044 2.2119 C.3 1 LGD -0.1374
9 N1 -0.0410 3.2554 -0.1341 N.4 1 LGD -0.8250
10 O3 3.1033 0.1563 1.0492 O.3 1 LGD -0.5122
11 C7 1.8986 2.0563 1.8847 C.3 1 LGD 0.1078
12 C8 -3.5569 -0.0617 0.5435 C.3 1 LGD 0.0883
13 O4 -3.5115 1.1641 -1.5636 O.3 1 LGD -0.3964
14 C9 3.4272 -1.2545 0.9618 C.3 1 LGD 0.3290
15 N2 2.7896 2.2116 3.0489 N.4 1 LGD -0.8133
16 C10 -5.1111 0.0728 0.5408 C.3 1 LGD 0.0742
17 O5 -3.1510 -1.3196 -0.0001 O.3 1 LGD -0.5689
18 C11 -4.9175 1.4938 -1.5580 C.3 1 LGD 0.1227
19 O6 2.9751 -1.7909 -0.3040 O.3 1 LGD -0.4333
20 C12 4.9704 -1.4521 1.0344 C.3 1 LGD 0.0907
21 C13 -5.7040 0.3325 -0.8856 C.3 1 LGD 0.1080
22 N3 -5.7480 -1.1063 1.1669 N.4 1 LGD -0.7338
23 C14 3.5136 -1.1684 -1.4961 C.3 1 LGD 0.1208
24 C15 5.6818 -0.8525 -0.2042 C.3 1 LGD -0.1027
25 N4 5.5227 -0.8390 2.2581 N.4 1 LGD -0.8189
26 C16 -5.6943 -0.9215 -1.8107 C.3 1 LGD -0.0969
27 O7 -7.0641 0.7353 -0.7316 O.3 1 LGD -0.5336
28 C17 -5.5809 -1.0958 2.6347 C.3 1 LGD 0.0861
29 C18 5.0483 -1.3885 -1.5076 C.3 1 LGD -0.0931
30 C19 2.7884 -1.7561 -2.7485 C.3 1 LGD 0.1267
31 N5 1.3733 -1.3246 -2.7626 N.4 1 LGD -0.7565
32 C20 2.8066 -3.3052 -2.8048 C.3 1 LGD -0.1345
33 C21 1.2328 0.0677 -3.2357 C.3 1 LGD 0.0837
34 H1 -1.0904 0.5040 1.5987 H 1 LGD 0.1216
35 H2 1.0843 0.7318 -0.5268 H 1 LGD 0.0344
36 H3 -1.4546 2.9180 1.3778 H 1 LGD 0.1642
37 H4 1.5108 -0.0166 2.4167 H 1 LGD 0.1023
38 H5 1.3047 -1.5284 0.2193 H 1 LGD 0.4496
39 H6 -3.0746 2.0660 0.2591 H 1 LGD 0.0466
40 H7 0.6639 3.7751 2.4158 H 1 LGD 0.1326
41 H8 0.1222 2.2590 3.1288 H 1 LGD 0.1326
42 H9 0.0080 4.2458 0.0633 H 1 LGD 0.4780
43 H10 -0.7014 3.0998 -0.8847 H 1 LGD 0.4780
44 H11 2.3412 2.5852 1.0383 H 1 LGD 0.1148
45 H12 -3.2178 0.0038 1.5841 H 1 LGD 0.0460
46 H13 2.9510 -1.7970 1.7877 H 1 LGD 0.1256
47 H14 3.6945 1.8227 2.8300 H 1 LGD 0.4814
48 H15 2.8981 3.1914 3.2733 H 1 LGD 0.4814
49 H16 -5.3633 0.9437 1.1486 H 1 LGD 0.1024
50 H17 -2.3399 -1.1505 -0.5141 H 1 LGD 0.4376
51 H18 -5.0832 2.4325 -1.0134 H 1 LGD 0.1144
52 H19 -5.2693 1.6305 -2.5888 H 1 LGD 0.1144
53 H20 5.1721 -2.5258 1.0590 H 1 LGD 0.1776
54 H21 -5.3337 -1.9443 0.7793 H 1 LGD 0.4846
55 H22 3.3271 -0.0877 -1.4657 H 1 LGD 0.0436
56 H23 5.6066 0.2430 -0.1870 H 1 LGD 0.1002
57 H24 6.7505 -1.1023 -0.1818 H 1 LGD 0.1002
58 H25 5.3594 0.1565 2.2370 H 1 LGD 0.4709
59 H26 6.5188 -1.0076 2.3032 H 1 LGD 0.4709
60 H27 -4.6763 -1.2404 -2.0616 H 1 LGD 0.0793
61 H28 -6.2120 -1.7702 -1.3471 H 1 LGD 0.0793
62 H29 -6.2031 -0.7023 -2.7583 H 1 LGD 0.0793
63 H30 -7.1384 1.2390 0.0978 H 1 LGD 0.4170
64 H31 -6.0192 -0.1849 3.0472 H 1 LGD 0.1113
65 H32 -6.0813 -1.9642 3.0675 H 1 LGD 0.1113
66 H33 -4.5193 -1.1315 2.8860 H 1 LGD 0.1113
67 H34 5.2830 -2.4556 -1.6055 H 1 LGD 0.1231
68 H35 5.4927 -0.8799 -2.3730 H 1 LGD 0.1231
69 H36 3.2720 -1.3743 -3.6505 H 1 LGD 0.1514
70 H37 0.9808 -1.4159 -1.8348 H 1 LGD 0.4670
71 H38 3.8308 -3.6917 -2.8647 H 1 LGD 0.1019
72 H39 2.3223 -3.7466 -1.9245 H 1 LGD 0.1019
73 H40 2.2726 -3.6612 -3.6949 H 1 LGD 0.1019
74 H41 1.6323 0.1528 -4.2482 H 1 LGD 0.1034
75 H42 0.1771 0.3462 -3.2404 H 1 LGD 0.1034
76 H43 1.7796 0.7415 -2.5742 H 1 LGD 0.1034
77 H44 0.8664 2.9262 -0.4296 H 1 LGD 0.4780
78 H45 2.4033 1.7302 3.8491 H 1 LGD 0.4814
79 H46 -6.7351 -1.1004 0.9450 H 1 LGD 0.4846
80 H47 5.0857 -1.2400 3.0765 H 1 LGD 0.4709
81 H48 0.8554 -1.9271 -3.3885 H 1 LGD 0.4670
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1