@COMMENT
LIGANDBOX_ID = D08013-12
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-12
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.5962 -0.5603 -1.1435 C.3 1 LGD 0.1331
2 C2 0.8321 0.6646 -0.5728 C.3 1 LGD 0.1352
3 O1 0.9821 -1.7492 -0.5942 O.3 1 LGD -0.5029
4 C3 3.1098 -0.5596 -0.7995 C.3 1 LGD 0.1019
5 C4 1.5257 2.0309 -0.8918 C.3 1 LGD 0.0919
6 O2 -0.4926 0.6330 -1.0976 O.3 1 LGD -0.5777
7 C5 1.2394 -2.9813 -1.3044 C.3 1 LGD 0.3013
8 C6 3.7607 0.7821 -1.2028 C.3 1 LGD -0.1373
9 N1 3.3039 -0.7918 0.6470 N.4 1 LGD -0.8261
10 O3 0.9658 3.1013 -0.0795 O.3 1 LGD -0.5146
11 C7 3.0419 1.9885 -0.5535 C.3 1 LGD 0.1086
12 C8 0.6836 -4.1723 -0.4777 C.3 1 LGD 0.1168
13 O4 0.5716 -2.9489 -2.5864 O.3 1 LGD -0.3815
14 C9 -0.3281 3.6516 -0.4373 C.3 1 LGD 0.3298
15 N2 3.6883 3.2317 -1.0117 N.4 1 LGD -0.8133
16 C10 -0.8762 -4.1369 -0.4047 C.3 1 LGD 0.0437
17 O5 1.2611 -4.1485 0.8268 O.3 1 LGD -0.5527
18 C11 -0.8626 -2.7657 -2.5427 C.3 1 LGD 0.1213
19 O6 -1.3892 2.8413 0.1216 O.3 1 LGD -0.4343
20 C12 -0.4759 5.0876 0.1466 C.3 1 LGD 0.0909
21 C13 -1.5081 -3.9818 -1.8261 C.3 1 LGD 0.1008
22 N3 -1.4242 -5.3522 0.2437 N.4 1 LGD -0.7404
23 C14 -1.3932 2.6863 1.5619 C.3 1 LGD 0.1222
24 C15 -0.5205 5.0723 1.6951 C.3 1 LGD -0.1025
25 N4 0.6314 5.9548 -0.3009 N.4 1 LGD -0.8187
26 C16 -1.3479 -5.2582 -2.7034 C.3 1 LGD -0.1108
27 O7 -2.9043 -3.7277 -1.6766 O.3 1 LGD -0.5331
28 C17 -1.4710 -5.2419 1.7164 C.3 1 LGD 0.0839
29 C18 -1.5971 4.0849 2.1989 C.3 1 LGD -0.0928
30 C19 -2.4954 1.6524 1.9597 C.3 1 LGD 0.1263
31 N5 -2.1187 0.3009 1.4901 N.4 1 LGD -0.7603
32 C20 -3.8918 1.9782 1.3704 C.3 1 LGD -0.1346
33 C21 -1.1101 -0.3211 2.3715 C.3 1 LGD 0.0892
34 H1 1.4848 -0.5482 -2.2364 H 1 LGD 0.1513
35 H2 0.7956 0.5611 0.5183 H 1 LGD 0.0222
36 H3 3.5974 -1.3705 -1.3464 H 1 LGD 0.1760
37 H4 1.4074 2.2589 -1.9596 H 1 LGD 0.1097
38 H5 -0.8858 1.5097 -0.9238 H 1 LGD 0.4468
39 H6 2.3178 -3.1112 -1.4533 H 1 LGD 0.1176
40 H7 4.8205 0.7784 -0.9157 H 1 LGD 0.1374
41 H8 3.7321 0.8794 -2.2965 H 1 LGD 0.1374
42 H9 4.2908 -0.8232 0.8647 H 1 LGD 0.4727
43 H10 2.8840 -1.6756 0.9006 H 1 LGD 0.4727
44 H11 3.1532 1.9211 0.5306 H 1 LGD 0.1088
45 H12 0.9883 -5.0985 -0.9805 H 1 LGD 0.1657
46 H13 -0.4257 3.6905 -1.5291 H 1 LGD 0.1301
47 H14 3.2419 4.0214 -0.5702 H 1 LGD 0.4816
48 H15 4.6677 3.2247 -0.7607 H 1 LGD 0.4816
49 H16 -1.1750 -3.2686 0.1855 H 1 LGD 0.0628
50 H17 0.9184 -3.3560 1.2752 H 1 LGD 0.3878
51 H18 -1.1153 -1.8379 -2.0150 H 1 LGD 0.0960
52 H19 -1.2541 -2.6878 -3.5650 H 1 LGD 0.0960
53 H20 -1.4172 5.5050 -0.2192 H 1 LGD 0.1776
54 H21 -0.8723 -6.1565 -0.0236 H 1 LGD 0.4839
55 H22 -0.4218 2.3005 1.8954 H 1 LGD 0.0431
56 H23 0.4587 4.7785 2.0962 H 1 LGD 0.1012
57 H24 -0.7352 6.0796 2.0751 H 1 LGD 0.1012
58 H25 1.5047 5.5907 0.0497 H 1 LGD 0.4720
59 H26 0.4974 6.8903 0.0590 H 1 LGD 0.4720
60 H27 -0.2939 -5.5296 -2.8376 H 1 LGD 0.0898
61 H28 -1.8648 -6.1184 -2.2599 H 1 LGD 0.0898
62 H29 -1.7750 -5.0957 -3.7015 H 1 LGD 0.0898
63 H30 -3.0549 -3.3904 -0.7766 H 1 LGD 0.3868
64 H31 -2.0304 -4.3490 2.0016 H 1 LGD 0.1131
65 H32 -1.9644 -6.1227 2.1323 H 1 LGD 0.1131
66 H33 -0.4588 -5.1803 2.1189 H 1 LGD 0.1131
67 H34 -2.5889 4.4806 1.9478 H 1 LGD 0.1221
68 H35 -1.5482 4.0084 3.2929 H 1 LGD 0.1221
69 H36 -2.5802 1.6255 3.0484 H 1 LGD 0.1488
70 H37 -1.7630 0.3585 0.5445 H 1 LGD 0.4655
71 H38 -4.2648 2.9428 1.7341 H 1 LGD 0.1033
72 H39 -3.8697 2.0082 0.2737 H 1 LGD 0.1033
73 H40 -4.6204 1.2144 1.6701 H 1 LGD 0.1033
74 H41 -1.5107 -0.4072 3.3835 H 1 LGD 0.0973
75 H42 -0.8617 -1.3154 1.9956 H 1 LGD 0.0973
76 H43 -0.2073 0.2914 2.3919 H 1 LGD 0.0973
77 H44 2.8650 -0.0560 1.1809 H 1 LGD 0.4727
78 H45 3.6050 3.3174 -2.0151 H 1 LGD 0.4816
79 H46 -2.3670 -5.4942 -0.0956 H 1 LGD 0.4839
80 H47 0.6574 5.9934 -1.3105 H 1 LGD 0.4720
81 H48 -2.9449 -0.2820 1.4861 H 1 LGD 0.4655
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1