@COMMENT
LIGANDBOX_ID = D08013-13
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08013
NAME = Gentamicin_(BAN)_Gentamicin_(TN)
MOLECULAR_FORMULA = C21H43N5O7
MOLECULAR_WEIGHT = 477.603
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 11
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 13
TPSA = 199.7300
HOMO = -22.8469
LUMO = -14.2978
mLOGD = -2.472
mLOGS = 4.775
mLOGPA = -4.415
@MOLECULE
D08013-13
81 83 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 1.6639 -0.7308 -1.0398 C.3 1 LGD 0.1353
2 C2 0.8982 0.4903 -0.4620 C.3 1 LGD 0.1316
3 O1 1.0497 -1.9163 -0.4888 O.3 1 LGD -0.5266
4 C3 3.1758 -0.7253 -0.6934 C.3 1 LGD 0.1032
5 C4 1.5805 1.8580 -0.8002 C.3 1 LGD 0.0935
6 O2 -0.4366 0.4441 -0.9604 O.3 1 LGD -0.5884
7 C5 1.3258 -3.1702 -1.1516 C.3 1 LGD 0.2696
8 C6 3.8220 0.6150 -1.1095 C.3 1 LGD -0.1374
9 N1 3.3669 -0.9414 0.7562 N.4 1 LGD -0.8264
10 O3 1.0215 2.9344 0.0049 O.3 1 LGD -0.5135
11 C7 3.0997 1.8260 -0.4711 C.3 1 LGD 0.1084
12 C8 0.6573 -4.3192 -0.3470 C.3 1 LGD 0.1329
13 O4 0.7685 -3.1569 -2.4866 O.3 1 LGD -0.3887
14 C9 -0.2720 3.4827 -0.3571 C.3 1 LGD 0.3286
15 N2 3.7381 3.0667 -0.9465 N.4 1 LGD -0.8130
16 C10 -0.9039 -4.2444 -0.4032 C.3 1 LGD 0.0511
17 O5 1.1079 -5.5804 -0.8343 O.3 1 LGD -0.4985
18 C11 -0.6513 -2.8898 -2.5763 C.3 1 LGD 0.1276
19 O6 -1.3322 2.6793 0.2128 O.3 1 LGD -0.4356
20 C12 -0.4177 4.9271 0.2085 C.3 1 LGD 0.0916
21 C13 -1.4440 -4.0244 -1.8699 C.3 1 LGD 0.1113
22 N3 -1.3109 -3.1437 0.5053 N.4 1 LGD -0.7425
23 C14 -1.3363 2.5475 1.6553 C.3 1 LGD 0.1213
24 C15 -0.4692 4.9338 1.7569 C.3 1 LGD -0.1028
25 N4 0.6941 5.7857 -0.2446 N.4 1 LGD -0.8189
26 C16 -1.3706 -5.3322 -2.7059 C.3 1 LGD -0.1345
27 O7 -2.8181 -3.6415 -1.8337 O.3 1 LGD -0.6157
28 C17 -2.6224 -3.3844 1.1446 C.3 1 LGD 0.0807
29 C18 -1.5481 3.9541 2.2697 C.3 1 LGD -0.0924
30 C19 -2.4323 1.5144 2.0704 C.3 1 LGD 0.1255
31 N5 -2.0319 0.1540 1.6488 N.4 1 LGD -0.7687
32 C20 -3.8241 1.8068 1.4539 C.3 1 LGD -0.1349
33 C21 -1.0227 -0.4122 2.5672 C.3 1 LGD 0.0859
34 H1 1.5515 -0.7186 -2.1325 H 1 LGD 0.1528
35 H2 0.8811 0.3924 0.6304 H 1 LGD 0.0183
36 H3 3.6656 -1.5406 -1.2318 H 1 LGD 0.1802
37 H4 1.4540 2.0742 -1.8696 H 1 LGD 0.1114
38 H5 -0.8209 1.3310 -0.8206 H 1 LGD 0.4517
39 H6 2.4086 -3.3348 -1.2031 H 1 LGD 0.1181
40 H7 4.8820 0.6175 -0.8231 H 1 LGD 0.1397
41 H8 3.7924 0.7019 -2.2040 H 1 LGD 0.1397
42 H9 4.3534 -0.9855 0.9740 H 1 LGD 0.4727
43 H10 2.9321 -1.8139 1.0237 H 1 LGD 0.4727
44 H11 3.2171 1.7716 0.6131 H 1 LGD 0.1092
45 H12 0.9677 -4.2300 0.7019 H 1 LGD 0.0781
46 H13 -0.3712 3.5084 -1.4492 H 1 LGD 0.1310
47 H14 3.2911 3.8594 -0.5110 H 1 LGD 0.4826
48 H15 4.7189 3.0664 -0.7010 H 1 LGD 0.4826
49 H16 -1.3100 -5.1744 -0.0009 H 1 LGD 0.1625
50 H17 1.1121 -5.5371 -1.8071 H 1 LGD 0.4569
51 H18 -0.8893 -1.9234 -2.1167 H 1 LGD 0.0920
52 H19 -0.9484 -2.8375 -3.6315 H 1 LGD 0.0920
53 H20 -1.3561 5.3427 -0.1667 H 1 LGD 0.1787
54 H21 -1.3193 -2.2780 -0.0163 H 1 LGD 0.4250
55 H22 -0.3625 2.1743 1.9955 H 1 LGD 0.0422
56 H23 0.5081 4.6451 2.1663 H 1 LGD 0.1028
57 H24 -0.6850 5.9464 2.1219 H 1 LGD 0.1028
58 H25 1.5648 5.4234 0.1142 H 1 LGD 0.4728
59 H26 0.5613 6.7257 0.1042 H 1 LGD 0.4728
60 H27 -0.3409 -5.5926 -2.9756 H 1 LGD 0.0951
61 H28 -1.8001 -6.1769 -2.1520 H 1 LGD 0.0951
62 H29 -1.9269 -5.2249 -3.6464 H 1 LGD 0.0951
63 H30 -3.3498 -4.4561 -1.8814 H 1 LGD 0.4737
64 H31 -2.6213 -4.3635 1.6275 H 1 LGD 0.1176
65 H32 -2.8112 -2.6148 1.8949 H 1 LGD 0.1176
66 H33 -3.4166 -3.3537 0.3975 H 1 LGD 0.1176
67 H34 -2.5396 4.3431 2.0068 H 1 LGD 0.1237
68 H35 -1.5050 3.8944 3.3650 H 1 LGD 0.1237
69 H36 -2.5309 1.5207 3.1583 H 1 LGD 0.1525
70 H37 -1.6661 0.1935 0.7064 H 1 LGD 0.4616
71 H38 -4.2067 2.7827 1.7756 H 1 LGD 0.1052
72 H39 -3.7905 1.7947 0.3570 H 1 LGD 0.1052
73 H40 -4.5511 1.0502 1.7752 H 1 LGD 0.1052
74 H41 -1.4327 -0.4591 3.5781 H 1 LGD 0.0985
75 H42 -0.7524 -1.4175 2.2418 H 1 LGD 0.0985
76 H43 -0.1300 0.2154 2.5697 H 1 LGD 0.0985
77 H44 2.9411 -0.1912 1.2805 H 1 LGD 0.4727
78 H45 3.6490 3.1413 -1.9503 H 1 LGD 0.4826
79 H46 -0.6145 -3.0757 1.2335 H 1 LGD 0.4250
80 H47 0.7243 5.8129 -1.2544 H 1 LGD 0.4728
81 H48 -2.8520 -0.4369 1.6575 H 1 LGD 0.4616
@BOND
1 1 2 1
2 1 3 1
3 1 4 1
4 2 5 1
5 2 6 1
6 3 7 1
7 4 8 1
8 4 9 1
9 5 10 1
10 5 11 1
11 7 12 1
12 7 13 1
13 10 14 1
14 11 15 1
15 12 16 1
16 12 17 1
17 13 18 1
18 14 19 1
19 14 20 1
20 16 21 1
21 16 22 1
22 19 23 1
23 20 24 1
24 20 25 1
25 21 26 1
26 21 27 1
27 22 28 1
28 23 29 1
29 23 30 1
30 30 31 1
31 30 32 1
32 31 33 1
33 8 11 1
34 18 21 1
35 24 29 1
36 1 34 1
37 2 35 1
38 4 36 1
39 5 37 1
40 6 38 1
41 7 39 1
42 8 40 1
43 8 41 1
44 9 42 1
45 9 43 1
46 11 44 1
47 12 45 1
48 14 46 1
49 15 47 1
50 15 48 1
51 16 49 1
52 17 50 1
53 18 51 1
54 18 52 1
55 20 53 1
56 22 54 1
57 23 55 1
58 24 56 1
59 24 57 1
60 25 58 1
61 25 59 1
62 26 60 1
63 26 61 1
64 26 62 1
65 27 63 1
66 28 64 1
67 28 65 1
68 28 66 1
69 29 67 1
70 29 68 1
71 30 69 1
72 31 70 1
73 32 71 1
74 32 72 1
75 32 73 1
76 33 74 1
77 33 75 1
78 33 76 1
79 9 77 1
80 15 78 1
81 22 79 1
82 25 80 1
83 31 81 1