@COMMENT
LIGANDBOX_ID = D08480-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08480
NAME = Rifamycin_sodium_(USAN)_Rifamycin_SV_sodium_salt_Aemcolo_(TN)_Otofa_(TN)_Rifocina_(TN)
MOLECULAR_FORMULA = C37H47NO12
MOLECULAR_WEIGHT = 697.778
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 12
NUM_OF_CHIRAL_ATOMS = 9
TPSA = 201.3100
HOMO = -8.0019
LUMO = -1.2458
mLOGD = 1.739
mLOGPA = -5.958
mLOGS = -2.431
@MOLECULE
D08480-01
97 100 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 0.4490 0.8550 1.7480 C.3 1 LGD 0.1613
2 C2 1.7990 0.0940 2.0340 C.3 1 LGD -0.1049
3 O1 1.4260 3.6950 2.1730 O.3 1 LGD -0.6189
4 C3 1.0570 2.8910 3.2970 C.3 1 LGD 0.1463
5 C4 -0.0320 1.8330 2.8870 C.3 1 LGD -0.0831
6 C5 1.9170 4.6700 4.8370 C.2 1 LGD -0.1635
7 C6 0.6900 3.8350 4.4930 C.3 1 LGD -0.0641
8 C7 5.8560 2.9640 4.5840 C.2 1 LGD 0.6749
9 C8 5.5690 4.3320 5.1550 C.2 1 LGD -0.1723
10 C9 4.3320 4.8380 5.4360 C.2 1 LGD -0.0522
11 C10 3.0680 4.1200 5.2780 C.2 1 LGD -0.1435
12 C11 0.1850 3.0740 5.7470 C.3 1 LGD -0.0835
13 C12 -1.3890 2.4930 2.5110 C.3 1 LGD -0.0853
14 O2 0.5540 1.5710 0.5150 O.3 1 LGD -0.6119
15 C13 6.7960 5.2200 5.3750 C.3 1 LGD -0.0646
16 O3 4.9630 2.1800 4.3100 O.2 1 LGD -0.5858
17 N1 7.1680 2.5960 4.2910 N.am 1 LGD -0.4762
18 C14 2.2100 -0.8210 0.8130 C.3 1 LGD 0.1788
19 O4 1.1250 -1.7280 0.4590 O.3 1 LGD -0.4519
20 C15 3.5980 -1.5650 0.9040 C.3 1 LGD -0.1133
21 C16 7.5140 1.3310 3.8170 C.ar 1 LGD 0.0579
22 C17 6.9590 0.1780 4.3860 C.ar 1 LGD -0.1135
23 C18 8.4110 1.2110 2.7390 C.ar 1 LGD 0.0879
24 C19 8.6730 -0.0650 2.1480 C.ar 1 LGD -0.0964
25 C20 8.0740 -1.2290 2.7300 C.ar 1 LGD 0.0179
26 C21 7.2290 -1.0860 3.8640 C.ar 1 LGD 0.1221
27 C22 9.4790 -0.2020 0.9660 C.ar 1 LGD 0.2040
28 C23 9.6250 -1.4530 0.3250 C.ar 1 LGD -0.2052
29 C24 9.0080 -2.5620 0.9050 C.ar 1 LGD 0.2067
30 C25 8.3080 -2.4750 2.0950 C.ar 1 LGD -0.3024
31 O5 8.9560 2.3640 2.2390 O.3 1 LGD -0.5143
32 O6 10.0930 0.8760 0.3830 O.3 1 LGD -0.5192
33 C26 1.7670 -0.6410 3.4060 C.3 1 LGD -0.0883
34 C27 0.7920 -2.8810 1.1210 C.2 1 LGD 0.6437
35 C28 -0.4450 -3.5200 0.5000 C.3 1 LGD -0.1505
36 O7 1.3930 -3.3640 2.0650 O.2 1 LGD -0.5320
37 C29 3.8920 -2.4560 -0.3620 C.3 1 LGD 0.2090
38 O8 4.5960 -1.7160 -1.3900 O.3 1 LGD -0.4403
39 C30 4.7420 -3.6650 -0.0020 C.2 1 LGD -0.1995
40 C31 4.7620 -0.5800 1.2120 C.3 1 LGD -0.0802
41 C32 3.8230 -0.8000 -2.1860 C.3 1 LGD 0.1273
42 C33 6.0770 -3.6670 0.0580 C.2 1 LGD 0.0271
43 O9 6.7920 -4.7830 0.4060 O.3 1 LGD -0.3376
44 O10 8.9650 -3.8190 0.3400 O.3 1 LGD -0.3184
45 C34 8.0570 -4.6520 1.1030 C.3 1 LGD 0.2672
46 C35 7.8680 -3.8630 2.4040 C.2 1 LGD 0.5589
47 C36 8.6750 -6.0530 1.2910 C.3 1 LGD -0.0653
48 C37 10.4090 -1.5890 -0.9820 C.3 1 LGD -0.0466
49 O11 6.5900 -2.1350 4.4560 O.3 1 LGD -0.5114
50 O12 7.7060 -4.3530 3.5100 O.2 1 LGD -0.4921
51 H1 -0.3310 0.0900 1.6350 H 1 LGD 0.0654
52 H2 2.5810 0.8580 2.1110 H 1 LGD 0.0642
53 H3 2.1230 4.3050 2.4740 H 1 LGD 0.4166
54 H4 1.9380 2.3240 3.6160 H 1 LGD 0.0495
55 H5 -0.2340 1.2080 3.7640 H 1 LGD 0.0590
56 H6 1.8570 5.7310 4.6020 H 1 LGD 0.1222
57 H7 -0.1100 4.5140 4.1720 H 1 LGD 0.0635
58 H8 4.2360 5.8680 5.7750 H 1 LGD 0.1327
59 H9 3.0900 3.0530 5.4800 H 1 LGD 0.1536
60 H10 0.8790 2.2740 6.0340 H 1 LGD 0.0393
61 H11 0.0850 3.7600 6.5980 H 1 LGD 0.0393
62 H12 -0.8000 2.6250 5.5700 H 1 LGD 0.0393
63 H13 -1.2700 3.2270 1.7030 H 1 LGD 0.0390
64 H14 -2.1080 1.7350 2.1760 H 1 LGD 0.0390
65 H15 -1.8330 3.0080 3.3710 H 1 LGD 0.0390
66 H16 0.8670 2.4670 0.7510 H 1 LGD 0.4285
67 H17 6.5320 6.1810 5.8320 H 1 LGD 0.0466
68 H18 7.5220 4.7340 6.0390 H 1 LGD 0.0466
69 H19 7.3000 5.4370 4.4250 H 1 LGD 0.0466
70 H20 7.8480 3.3350 4.1860 H 1 LGD 0.3318
71 H21 2.3100 -0.1280 -0.0270 H 1 LGD 0.0850
72 H22 3.5640 -2.2490 1.7580 H 1 LGD 0.0805
73 H23 6.2960 0.2570 5.2440 H 1 LGD 0.1709
74 H24 9.5070 2.1140 1.4700 H 1 LGD 0.4529
75 H25 10.5630 0.5740 -0.4150 H 1 LGD 0.4581
76 H26 2.6420 -1.2840 3.5470 H 1 LGD 0.0404
77 H27 1.7720 0.0760 4.2350 H 1 LGD 0.0404
78 H28 0.8630 -1.2550 3.5060 H 1 LGD 0.0404
79 H29 -0.2490 -3.7680 -0.5510 H 1 LGD 0.0674
80 H30 -0.7160 -4.4360 1.0400 H 1 LGD 0.0674
81 H31 -1.2870 -2.8180 0.5410 H 1 LGD 0.0674
82 H32 2.9490 -2.8410 -0.7710 H 1 LGD 0.0503
83 H33 4.1850 -4.5700 0.2340 H 1 LGD 0.1422
84 H34 4.6770 -0.1730 2.2270 H 1 LGD 0.0409
85 H35 5.7320 -1.0840 1.1470 H 1 LGD 0.0409
86 H36 4.7710 0.2620 0.5080 H 1 LGD 0.0409
87 H37 4.3890 -0.5260 -3.0850 H 1 LGD 0.0318
88 H38 2.8750 -1.2580 -2.4980 H 1 LGD 0.0318
89 H39 3.6150 0.1210 -1.6280 H 1 LGD 0.0318
90 H40 6.6710 -2.7880 -0.1760 H 1 LGD 0.1395
91 H41 8.8290 -6.5420 0.3210 H 1 LGD 0.0686
92 H42 9.6450 -5.9840 1.7990 H 1 LGD 0.0686
93 H43 8.0170 -6.6900 1.8960 H 1 LGD 0.0686
94 H44 10.4400 -2.6240 -1.3420 H 1 LGD 0.0515
95 H45 9.9570 -0.9810 -1.7750 H 1 LGD 0.0515
96 H46 11.4480 -1.2600 -0.8530 H 1 LGD 0.0515
97 H47 6.9550 -2.9770 4.1210 H 1 LGD 0.4543
@BOND
1 1 2 1
2 3 4 1
3 4 5 1
4 1 5 1
5 6 7 1
6 4 7 1
7 8 9 1
8 9 10 2
9 10 11 1
10 6 11 2
11 7 12 1
12 5 13 1
13 1 14 1
14 9 15 1
15 8 16 2
16 8 17 am
17 2 18 1
18 18 19 1
19 18 20 1
20 17 21 1
21 21 22 ar
22 21 23 ar
23 23 24 ar
24 24 25 ar
25 25 26 ar
26 24 27 1
27 27 28 2
28 28 29 1
29 29 30 2
30 25 30 1
31 23 31 1
32 27 32 1
33 2 33 1
34 19 34 1
35 34 35 1
36 34 36 2
37 22 26 ar
38 20 37 1
39 37 38 1
40 37 39 1
41 20 40 1
42 38 41 1
43 39 42 2
44 42 43 1
45 29 44 1
46 44 45 1
47 43 45 1
48 30 46 1
49 45 46 1
50 45 47 1
51 28 48 1
52 26 49 1
53 46 50 2
54 1 51 1
55 2 52 1
56 3 53 1
57 4 54 1
58 5 55 1
59 6 56 1
60 7 57 1
61 10 58 1
62 11 59 1
63 12 60 1
64 12 61 1
65 12 62 1
66 13 63 1
67 13 64 1
68 13 65 1
69 14 66 1
70 15 67 1
71 15 68 1
72 15 69 1
73 17 70 1
74 18 71 1
75 20 72 1
76 22 73 1
77 31 74 1
78 32 75 1
79 33 76 1
80 33 77 1
81 33 78 1
82 35 79 1
83 35 80 1
84 35 81 1
85 37 82 1
86 39 83 1
87 40 84 1
88 40 85 1
89 40 86 1
90 41 87 1
91 41 88 1
92 41 89 1
93 42 90 1
94 47 91 1
95 47 92 1
96 47 93 1
97 48 94 1
98 48 95 1
99 48 96 1
100 49 97 1