@COMMENT
LIGANDBOX_ID = D08871-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08871
NAME = Berubicin_hydrochloride_(USAN)
MOLECULAR_FORMULA = C34H35NO11
MOLECULAR_WEIGHT = 633.650
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 195.0700
HOMO = -10.9670
LUMO = -3.7228
mLOGS = -0.231
mLOGPA = -6.223
mLOGD = 0.690
@MOLECULE
D08871-01
82 87 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 11.2430 -21.2500 -3.4070 C.ar 1 LGD -0.0723
2 C2 11.0030 -22.0160 -2.2610 C.ar 1 LGD -0.1937
3 C3 11.8760 -21.9340 -1.1540 C.ar 1 LGD 0.1977
4 C4 13.0000 -21.0690 -1.2060 C.ar 1 LGD -0.1621
5 C5 13.2400 -20.3130 -2.3710 C.ar 1 LGD -0.1027
6 C6 12.3560 -20.4030 -3.4640 C.ar 1 LGD -0.1161
7 C7 13.9400 -20.9110 -0.0370 C.2 1 LGD 0.6051
8 C8 15.3400 -20.4230 -0.3340 C.ar 1 LGD -0.1973
9 C9 15.5780 -19.6710 -1.5020 C.ar 1 LGD -0.1803
10 C10 14.4330 -19.4060 -2.4540 C.2 1 LGD 0.5997
11 C11 16.4110 -20.7000 0.5500 C.ar 1 LGD 0.1675
12 C12 17.7170 -20.2420 0.2710 C.ar 1 LGD -0.0944
13 C13 17.9570 -19.4830 -0.8990 C.ar 1 LGD -0.0265
14 C14 16.8830 -19.1890 -1.7680 C.ar 1 LGD 0.1513
15 C15 18.8620 -20.6390 1.2170 C.3 1 LGD 0.2214
16 C16 20.1560 -19.8100 0.9980 C.3 1 LGD -0.1432
17 C17 20.5210 -19.6680 -0.5030 C.3 1 LGD 0.0738
18 C18 19.3580 -18.9330 -1.2220 C.3 1 LGD -0.0418
19 O1 11.6600 -22.7050 -0.0250 O.3 1 LGD -0.3409
20 C19 10.5260 -23.5730 0.1490 C.3 1 LGD 0.1378
21 O2 13.5720 -21.1050 1.1100 O.2 1 LGD -0.5128
22 O3 14.4560 -18.4890 -3.2600 O.2 1 LGD -0.5170
23 O4 17.1240 -18.4370 -2.8870 O.3 1 LGD -0.5015
24 O5 16.1940 -21.4390 1.6830 O.3 1 LGD -0.5225
25 O6 19.1180 -22.0400 0.9750 O.3 1 LGD -0.4748
26 C20 19.9430 -22.7690 1.9100 C.3 1 LGD 0.3602
27 C21 21.8680 -18.9200 -0.6780 C.2 1 LGD 0.5393
28 C22 23.1070 -19.5750 -0.0490 C.3 1 LGD 0.0459
29 O7 23.5250 -18.8120 1.0840 O.3 1 LGD -0.5870
30 O8 21.9630 -17.8660 -1.2880 O.2 1 LGD -0.4898
31 O9 20.6700 -20.9580 -1.0930 O.3 1 LGD -0.6086
32 C23 19.3860 -24.2110 2.0300 C.3 1 LGD -0.1224
33 C24 19.3830 -24.9550 0.6600 C.3 1 LGD 0.0793
34 C25 20.4020 -24.3130 -0.3360 C.3 1 LGD 0.0947
35 C26 21.6790 -23.7720 0.3750 C.3 1 LGD 0.1578
36 O10 21.3080 -22.8030 1.4030 O.3 1 LGD -0.4333
37 N1 19.6330 -26.3930 0.8720 N.4 1 LGD -0.8115
38 C27 22.5640 -24.8640 1.0280 C.3 1 LGD -0.1180
39 O11 20.7670 -25.2260 -1.4030 O.3 1 LGD -0.4312
40 C28 19.7450 -25.4800 -2.3990 C.3 1 LGD 0.1789
41 C29 19.2540 -24.1670 -3.0100 C.ar 1 LGD -0.1693
42 C30 17.9370 -23.7240 -2.7780 C.ar 1 LGD -0.1090
43 C31 17.5080 -22.4840 -3.2780 C.ar 1 LGD -0.1157
44 C32 18.3920 -21.6790 -4.0120 C.ar 1 LGD -0.0967
45 C33 19.7050 -22.1150 -4.2480 C.ar 1 LGD -0.1157
46 C34 20.1350 -23.3560 -3.7480 C.ar 1 LGD -0.1090
47 H1 10.5680 -21.3160 -4.2560 H 1 LGD 0.1526
48 H2 10.1380 -22.6710 -2.2480 H 1 LGD 0.1507
49 H3 12.5330 -19.8210 -4.3640 H 1 LGD 0.1614
50 H4 18.5320 -20.5010 2.2550 H 1 LGD 0.0748
51 H5 20.0010 -18.8060 1.4160 H 1 LGD 0.0809
52 H6 20.9840 -20.2410 1.5710 H 1 LGD 0.0809
53 H7 19.3750 -17.8720 -0.9410 H 1 LGD 0.0896
54 H8 19.5500 -18.9650 -2.3030 H 1 LGD 0.0896
55 H9 10.5770 -24.0570 1.1320 H 1 LGD 0.0486
56 H10 9.5930 -22.9980 0.0920 H 1 LGD 0.0486
57 H11 10.5190 -24.3520 -0.6230 H 1 LGD 0.0486
58 H12 16.2700 -18.2660 -3.3290 H 1 LGD 0.4648
59 H13 15.2320 -21.5920 1.7670 H 1 LGD 0.4654
60 H14 19.9210 -22.2770 2.8900 H 1 LGD 0.1141
61 H15 22.8740 -20.6060 0.2470 H 1 LGD 0.0708
62 H16 23.8990 -19.6080 -0.8070 H 1 LGD 0.0708
63 H17 23.6580 -17.8960 0.7800 H 1 LGD 0.4217
64 H18 20.1930 -21.5790 -0.5070 H 1 LGD 0.4228
65 H19 19.9890 -24.7560 2.7670 H 1 LGD 0.0811
66 H20 18.3660 -24.1810 2.4330 H 1 LGD 0.0811
67 H21 18.3850 -24.8450 0.2180 H 1 LGD 0.1177
68 H22 19.9220 -23.4360 -0.7790 H 1 LGD 0.1266
69 H23 22.2890 -23.2630 -0.3820 H 1 LGD 0.1165
70 H24 19.5790 -26.8640 -0.0200 H 1 LGD 0.4579
71 H25 20.5190 -26.5050 1.3430 H 1 LGD 0.4579
72 H26 22.8320 -25.6380 0.2990 H 1 LGD 0.0494
73 H27 23.4960 -24.4190 1.4000 H 1 LGD 0.0494
74 H28 22.0650 -25.3470 1.8750 H 1 LGD 0.0494
75 H29 20.1590 -26.1150 -3.1920 H 1 LGD 0.0534
76 H30 18.9030 -26.0200 -1.9470 H 1 LGD 0.0534
77 H31 17.2500 -24.3330 -2.1970 H 1 LGD 0.1288
78 H32 16.4920 -22.1460 -3.0930 H 1 LGD 0.1451
79 H33 18.0630 -20.7180 -4.3960 H 1 LGD 0.1505
80 H34 20.3930 -21.4890 -4.8090 H 1 LGD 0.1451
81 H35 21.1590 -23.6780 -3.9170 H 1 LGD 0.1288
82 H36 18.8830 -26.7780 1.4098 H 1 LGD 0.4579
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 ar
10 9 10 1
11 5 10 1
12 8 11 ar
13 11 12 ar
14 12 13 ar
15 13 14 ar
16 9 14 ar
17 12 15 1
18 15 16 1
19 16 17 1
20 17 18 1
21 13 18 1
22 3 19 1
23 19 20 1
24 7 21 2
25 10 22 2
26 14 23 1
27 11 24 1
28 25 26 1
29 15 25 1
30 17 27 1
31 27 28 1
32 28 29 1
33 27 30 2
34 17 31 1
35 26 32 1
36 32 33 1
37 33 34 1
38 34 35 1
39 35 36 1
40 26 36 1
41 33 37 1
42 35 38 1
43 34 39 1
44 39 40 1
45 40 41 1
46 41 42 ar
47 42 43 ar
48 43 44 ar
49 44 45 ar
50 45 46 ar
51 41 46 ar
52 1 47 1
53 2 48 1
54 6 49 1
55 15 50 1
56 16 51 1
57 16 52 1
58 18 53 1
59 18 54 1
60 20 55 1
61 20 56 1
62 20 57 1
63 23 58 1
64 24 59 1
65 26 60 1
66 28 61 1
67 28 62 1
68 29 63 1
69 31 64 1
70 32 65 1
71 32 66 1
72 33 67 1
73 34 68 1
74 35 69 1
75 37 70 1
76 37 71 1
77 38 72 1
78 38 73 1
79 38 74 1
80 40 75 1
81 40 76 1
82 42 77 1
83 43 78 1
84 44 79 1
85 45 80 1
86 46 81 1
87 37 82 1