@COMMENT
LIGANDBOX_ID = D08871-02
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08871
NAME = Berubicin_hydrochloride_(USAN)
MOLECULAR_FORMULA = C34H35NO11
MOLECULAR_WEIGHT = 633.650
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 195.0700
HOMO = -10.9670
LUMO = -3.7228
mLOGS = -0.231
mLOGPA = -6.223
mLOGD = 0.690
@MOLECULE
D08871-02
82 87 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -6.5499 0.9669 -2.4668 C.ar 1 LGD -0.0715
2 C2 -6.7682 0.1398 -1.3600 C.ar 1 LGD -0.1943
3 C3 -5.8571 0.1382 -0.2821 C.ar 1 LGD 0.1984
4 C4 -4.7121 0.9798 -0.3234 C.ar 1 LGD -0.1631
5 C5 -4.5032 1.8130 -1.4428 C.ar 1 LGD -0.1007
6 C6 -5.4265 1.7995 -2.5079 C.ar 1 LGD -0.1164
7 C7 -3.7263 1.0320 0.8175 C.2 1 LGD 0.6052
8 C8 -2.3544 1.6153 0.5450 C.ar 1 LGD -0.1929
9 C9 -2.1661 2.4870 -0.5505 C.ar 1 LGD -0.1923
10 C10 -3.3170 2.7357 -1.5069 C.2 1 LGD 0.6031
11 C11 -1.2604 1.3193 1.3946 C.ar 1 LGD 0.1577
12 C12 0.0030 1.9170 1.1930 C.ar 1 LGD -0.0717
13 C13 0.1683 2.8615 0.1577 C.ar 1 LGD -0.0409
14 C14 -0.9085 3.1246 -0.7210 C.ar 1 LGD 0.1642
15 C15 1.1685 1.5002 2.1025 C.3 1 LGD 0.2262
16 C16 2.4616 2.3570 1.9694 C.3 1 LGD -0.0884
17 C17 2.7389 2.9409 0.5520 C.3 1 LGD 0.0782
18 C18 1.4692 3.6727 0.0440 C.3 1 LGD -0.0591
19 O1 -6.0646 -0.6838 0.8122 O.3 1 LGD -0.3388
20 C19 -7.2465 -1.4818 1.0008 C.3 1 LGD 0.1372
21 O2 -4.0395 0.6746 1.9415 O.2 1 LGD -0.5179
22 O3 -3.3008 3.6526 -2.3124 O.2 1 LGD -0.5222
23 O4 -0.7255 4.0182 -1.7409 O.3 1 LGD -0.4997
24 O5 -1.4198 0.4423 2.4343 O.3 1 LGD -0.5275
25 O6 1.4510 0.1174 1.8078 O.3 1 LGD -0.4481
26 C20 2.1299 -0.6661 2.8129 C.3 1 LGD 0.3647
27 C21 3.2385 1.8916 -0.4840 C.2 1 LGD 0.5291
28 C22 3.6101 2.4084 -1.8838 C.3 1 LGD 0.0408
29 O7 2.5553 2.1220 -2.7974 O.3 1 LGD -0.5850
30 O8 3.3787 0.7123 -0.2213 O.2 1 LGD -0.5139
31 O9 3.7851 3.9068 0.6970 O.3 1 LGD -0.5844
32 C23 1.3929 -2.0221 2.9571 C.3 1 LGD -0.1269
33 C24 1.3980 -2.8378 1.6314 C.3 1 LGD 0.0854
34 C25 2.5189 -2.3509 0.6611 C.3 1 LGD 0.0965
35 C26 3.8135 -1.9340 1.4253 C.3 1 LGD 0.1708
36 O10 3.5073 -0.8888 2.3983 O.3 1 LGD -0.4172
37 N1 1.5543 -4.2724 1.9407 N.4 1 LGD -0.8211
38 C27 4.5203 -3.0943 2.1724 C.3 1 LGD -0.1240
39 O11 2.8240 -3.3576 -0.3340 O.3 1 LGD -0.4346
40 C28 1.7753 -3.6691 -1.2847 C.3 1 LGD 0.1806
41 C29 1.2883 -2.4149 -2.0109 C.ar 1 LGD -0.1562
42 C30 0.1029 -1.7714 -1.6012 C.ar 1 LGD -0.1040
43 C31 -0.3479 -0.6207 -2.2671 C.ar 1 LGD -0.1295
44 C32 0.3735 -0.1149 -3.3588 C.ar 1 LGD -0.1047
45 C33 1.5532 -0.7533 -3.7752 C.ar 1 LGD -0.1295
46 C34 2.0132 -1.8957 -3.0992 C.ar 1 LGD -0.1040
47 H1 -7.2540 0.9636 -3.2943 H 1 LGD 0.1529
48 H2 -7.6483 -0.4952 -1.3562 H 1 LGD 0.1511
49 H3 -5.2758 2.4356 -3.3759 H 1 LGD 0.1623
50 H4 0.8267 1.5761 3.1431 H 1 LGD 0.0611
51 H5 2.3522 3.2010 2.6633 H 1 LGD 0.0774
52 H6 3.3359 1.7974 2.3241 H 1 LGD 0.0774
53 H7 1.3356 4.5871 0.6367 H 1 LGD 0.0835
54 H8 1.6377 4.0157 -0.9830 H 1 LGD 0.0835
55 H9 -7.1897 -2.0077 1.9619 H 1 LGD 0.0488
56 H10 -8.1398 -0.8445 1.0052 H 1 LGD 0.0488
57 H11 -7.3370 -2.2267 0.2005 H 1 LGD 0.0488
58 H12 -1.5742 4.1091 -2.2152 H 1 LGD 0.4678
59 H13 -2.3732 0.2482 2.5146 H 1 LGD 0.4637
60 H14 2.1177 -0.1325 3.7708 H 1 LGD 0.1040
61 H15 3.8013 3.4874 -1.8473 H 1 LGD 0.0675
62 H16 4.5350 1.9087 -2.1986 H 1 LGD 0.0675
63 H17 2.3858 1.1633 -2.7542 H 1 LGD 0.4137
64 H18 3.6787 4.5709 -0.0066 H 1 LGD 0.4163
65 H19 1.8675 -2.5915 3.7661 H 1 LGD 0.0781
66 H20 0.3564 -1.8476 3.2716 H 1 LGD 0.0781
67 H21 0.4390 -2.7005 1.1285 H 1 LGD 0.1142
68 H22 2.1610 -1.4540 0.1459 H 1 LGD 0.1428
69 H23 4.5233 -1.5330 0.6908 H 1 LGD 0.1195
70 H24 1.5901 -4.7957 1.0770 H 1 LGD 0.4560
71 H25 2.4189 -4.4161 2.4418 H 1 LGD 0.4560
72 H26 4.7025 -3.9417 1.5001 H 1 LGD 0.0460
73 H27 5.4925 -2.7579 2.5539 H 1 LGD 0.0460
74 H28 3.9352 -3.4507 3.0275 H 1 LGD 0.0460
75 H29 2.1587 -4.3848 -2.0226 H 1 LGD 0.0497
76 H30 0.9315 -4.1475 -0.7725 H 1 LGD 0.0497
77 H31 -0.4696 -2.1606 -0.7646 H 1 LGD 0.1290
78 H32 -1.2596 -0.1272 -1.9424 H 1 LGD 0.1481
79 H33 0.0198 0.7704 -3.8801 H 1 LGD 0.1540
80 H34 2.1116 -0.3627 -4.6216 H 1 LGD 0.1481
81 H35 2.9289 -2.3815 -3.4252 H 1 LGD 0.1290
82 H36 0.7784 -4.5917 2.5030 H 1 LGD 0.4560
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 ar
10 9 10 1
11 5 10 1
12 8 11 ar
13 11 12 ar
14 12 13 ar
15 13 14 ar
16 9 14 ar
17 12 15 1
18 15 16 1
19 16 17 1
20 17 18 1
21 13 18 1
22 3 19 1
23 19 20 1
24 7 21 2
25 10 22 2
26 14 23 1
27 11 24 1
28 25 26 1
29 15 25 1
30 17 27 1
31 27 28 1
32 28 29 1
33 27 30 2
34 17 31 1
35 26 32 1
36 32 33 1
37 33 34 1
38 34 35 1
39 35 36 1
40 26 36 1
41 33 37 1
42 35 38 1
43 34 39 1
44 39 40 1
45 40 41 1
46 41 42 ar
47 42 43 ar
48 43 44 ar
49 44 45 ar
50 45 46 ar
51 41 46 ar
52 1 47 1
53 2 48 1
54 6 49 1
55 15 50 1
56 16 51 1
57 16 52 1
58 18 53 1
59 18 54 1
60 20 55 1
61 20 56 1
62 20 57 1
63 23 58 1
64 24 59 1
65 26 60 1
66 28 61 1
67 28 62 1
68 29 63 1
69 31 64 1
70 32 65 1
71 32 66 1
72 33 67 1
73 34 68 1
74 35 69 1
75 37 70 1
76 37 71 1
77 38 72 1
78 38 73 1
79 38 74 1
80 40 75 1
81 40 76 1
82 42 77 1
83 43 78 1
84 44 79 1
85 45 80 1
86 46 81 1
87 37 82 1