@COMMENT
LIGANDBOX_ID = D08871-03
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08871
NAME = Berubicin_hydrochloride_(USAN)
MOLECULAR_FORMULA = C34H35NO11
MOLECULAR_WEIGHT = 633.650
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 195.0700
HOMO = -10.9670
LUMO = -3.7228
mLOGS = -0.231
mLOGPA = -6.223
mLOGD = 0.690
@MOLECULE
D08871-03
82 87 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 4.0201 4.9639 6.2461 C.ar 1 LGD -0.0735
2 C2 4.5205 5.2884 4.9801 C.ar 1 LGD -0.1944
3 C3 3.7935 4.9494 3.8180 C.ar 1 LGD 0.2003
4 C4 2.5500 4.2735 3.9363 C.ar 1 LGD -0.1583
5 C5 2.0589 3.9455 5.2173 C.ar 1 LGD -0.1005
6 C6 2.7959 4.2975 6.3650 C.ar 1 LGD -0.1168
7 C7 1.7230 3.9121 2.7263 C.2 1 LGD 0.6080
8 C8 0.6980 2.8070 2.8813 C.ar 1 LGD -0.1915
9 C9 0.2054 2.4900 4.1670 C.ar 1 LGD -0.1723
10 C10 0.7488 3.2287 5.3719 C.2 1 LGD 0.6038
11 C11 0.2118 2.0981 1.7544 C.ar 1 LGD 0.1783
12 C12 -0.7635 1.0872 1.8966 C.ar 1 LGD -0.1008
13 C13 -1.2722 0.7833 3.1817 C.ar 1 LGD -0.0400
14 C14 -0.7871 1.4874 4.3053 C.ar 1 LGD 0.1534
15 C15 -1.2506 0.3349 0.6485 C.3 1 LGD 0.2126
16 C16 -2.5994 -0.3981 0.8770 C.3 1 LGD -0.1418
17 C17 -2.6021 -1.2308 2.1882 C.3 1 LGD 0.0735
18 C18 -2.3958 -0.2531 3.3770 C.3 1 LGD -0.0458
19 O1 4.2886 5.2538 2.5619 O.3 1 LGD -0.3346
20 C19 5.5146 5.9727 2.3407 C.3 1 LGD 0.1374
21 O2 1.8333 4.5234 1.6757 O.2 1 LGD -0.5140
22 O3 0.1536 3.2564 6.4374 O.2 1 LGD -0.5222
23 O4 -1.2931 1.1866 5.5411 O.3 1 LGD -0.5016
24 O5 0.6905 2.3841 0.5043 O.3 1 LGD -0.5089
25 O6 -0.2320 -0.6275 0.2798 O.3 1 LGD -0.4142
26 C20 -0.2594 -1.1018 -1.0808 C.3 1 LGD 0.3762
27 C21 -3.9203 -2.0426 2.3339 C.2 1 LGD 0.5458
28 C22 -4.1946 -3.1245 1.2750 C.3 1 LGD 0.0458
29 O7 -5.1496 -2.6468 0.3285 O.3 1 LGD -0.6022
30 O8 -4.7092 -1.8583 3.2465 O.2 1 LGD -0.4761
31 O9 -1.5191 -2.1652 2.1847 O.3 1 LGD -0.6169
32 C23 -0.6468 -2.6050 -1.0723 C.3 1 LGD -0.1575
33 C24 -0.6139 -3.2131 -2.4986 C.3 1 LGD 0.0808
34 C25 0.3154 -2.3953 -3.4464 C.3 1 LGD 0.0903
35 C26 1.5399 -1.7990 -2.6979 C.3 1 LGD 0.1669
36 O10 1.0651 -0.9042 -1.6523 O.3 1 LGD -0.4091
37 N1 -0.1839 -4.6218 -2.4054 N.4 1 LGD -0.8151
38 C27 2.5057 -2.8464 -2.0787 C.3 1 LGD -0.1241
39 O11 0.7704 -3.2145 -4.5508 O.3 1 LGD -0.4315
40 C28 -0.2233 -3.5575 -5.5433 C.3 1 LGD 0.1749
41 C29 -0.7756 -2.2907 -6.1861 C.ar 1 LGD -0.1660
42 C30 -2.1129 -1.9078 -5.9693 C.ar 1 LGD -0.1125
43 C31 -2.6051 -0.7151 -6.5234 C.ar 1 LGD -0.1208
44 C32 -1.7640 0.1000 -7.2974 C.ar 1 LGD -0.0992
45 C33 -0.4307 -0.2795 -7.5190 C.ar 1 LGD -0.1208
46 C34 0.0623 -1.4717 -6.9647 C.ar 1 LGD -0.1125
47 H1 4.5841 5.2261 7.1369 H 1 LGD 0.1506
48 H2 5.4752 5.8008 4.9195 H 1 LGD 0.1498
49 H3 2.4245 4.0482 7.3553 H 1 LGD 0.1599
50 H4 -1.3870 1.0569 -0.1674 H 1 LGD 0.0794
51 H5 -3.3957 0.3552 0.9399 H 1 LGD 0.0659
52 H6 -2.8540 -1.0131 0.0081 H 1 LGD 0.0659
53 H7 -3.3273 0.3015 3.5493 H 1 LGD 0.0908
54 H8 -2.2244 -0.8470 4.2845 H 1 LGD 0.0908
55 H9 5.6767 6.1082 1.2643 H 1 LGD 0.0481
56 H10 5.4670 6.9619 2.8133 H 1 LGD 0.0481
57 H11 6.3641 5.4148 2.7540 H 1 LGD 0.0481
58 H12 -0.9029 1.8093 6.1838 H 1 LGD 0.4660
59 H13 1.2672 3.1682 0.5777 H 1 LGD 0.4675
60 H14 -0.9897 -0.5342 -1.6706 H 1 LGD 0.0612
61 H15 -3.2606 -3.3965 0.7709 H 1 LGD 0.0616
62 H16 -4.5748 -4.0178 1.7862 H 1 LGD 0.0616
63 H17 -5.9766 -2.4708 0.8119 H 1 LGD 0.4301
64 H18 -0.7570 -1.7068 1.7821 H 1 LGD 0.4365
65 H19 0.0235 -3.1450 -0.3926 H 1 LGD 0.0864
66 H20 -1.6547 -2.7388 -0.6698 H 1 LGD 0.0864
67 H21 -1.6213 -3.1918 -2.9200 H 1 LGD 0.1092
68 H22 -0.2537 -1.5394 -3.8306 H 1 LGD 0.1100
69 H23 2.1188 -1.2109 -3.4214 H 1 LGD 0.1172
70 H24 -0.1372 -5.0183 -3.3336 H 1 LGD 0.4598
71 H25 0.7336 -4.6672 -1.9862 H 1 LGD 0.4598
72 H26 2.8322 -3.5705 -2.8354 H 1 LGD 0.0513
73 H27 3.4021 -2.3474 -1.6901 H 1 LGD 0.0513
74 H28 2.0538 -3.4019 -1.2508 H 1 LGD 0.0513
75 H29 0.2357 -4.1840 -6.3182 H 1 LGD 0.0557
76 H30 -1.0364 -4.1347 -5.0852 H 1 LGD 0.0557
77 H31 -2.7682 -2.5275 -5.3635 H 1 LGD 0.1317
78 H32 -3.6362 -0.4207 -6.3494 H 1 LGD 0.1488
79 H33 -2.1439 1.0246 -7.7226 H 1 LGD 0.1507
80 H34 0.2218 0.3520 -8.1152 H 1 LGD 0.1488
81 H35 1.0982 -1.7546 -7.1305 H 1 LGD 0.1317
82 H36 -0.8392 -5.1459 -1.8427 H 1 LGD 0.4598
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 ar
10 9 10 1
11 5 10 1
12 8 11 ar
13 11 12 ar
14 12 13 ar
15 13 14 ar
16 9 14 ar
17 12 15 1
18 15 16 1
19 16 17 1
20 17 18 1
21 13 18 1
22 3 19 1
23 19 20 1
24 7 21 2
25 10 22 2
26 14 23 1
27 11 24 1
28 25 26 1
29 15 25 1
30 17 27 1
31 27 28 1
32 28 29 1
33 27 30 2
34 17 31 1
35 26 32 1
36 32 33 1
37 33 34 1
38 34 35 1
39 35 36 1
40 26 36 1
41 33 37 1
42 35 38 1
43 34 39 1
44 39 40 1
45 40 41 1
46 41 42 ar
47 42 43 ar
48 43 44 ar
49 44 45 ar
50 45 46 ar
51 41 46 ar
52 1 47 1
53 2 48 1
54 6 49 1
55 15 50 1
56 16 51 1
57 16 52 1
58 18 53 1
59 18 54 1
60 20 55 1
61 20 56 1
62 20 57 1
63 23 58 1
64 24 59 1
65 26 60 1
66 28 61 1
67 28 62 1
68 29 63 1
69 31 64 1
70 32 65 1
71 32 66 1
72 33 67 1
73 34 68 1
74 35 69 1
75 37 70 1
76 37 71 1
77 38 72 1
78 38 73 1
79 38 74 1
80 40 75 1
81 40 76 1
82 42 77 1
83 43 78 1
84 44 79 1
85 45 80 1
86 46 81 1
87 37 82 1