@COMMENT
LIGANDBOX_ID = D08871-04
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08871
NAME = Berubicin_hydrochloride_(USAN)
MOLECULAR_FORMULA = C34H35NO11
MOLECULAR_WEIGHT = 633.650
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 195.0700
HOMO = -10.9670
LUMO = -3.7228
mLOGS = -0.231
mLOGPA = -6.223
mLOGD = 0.690
@MOLECULE
D08871-04
82 87 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -7.1063 1.0493 -2.6059 C.ar 1 LGD -0.0733
2 C2 -7.3471 0.2595 -1.4757 C.ar 1 LGD -0.1958
3 C3 -6.4807 0.3263 -0.3632 C.ar 1 LGD 0.1966
4 C4 -5.3611 1.1989 -0.3936 C.ar 1 LGD -0.1607
5 C5 -5.1228 1.9854 -1.5401 C.ar 1 LGD -0.0983
6 C6 -6.0013 1.9075 -2.6388 C.ar 1 LGD -0.1169
7 C7 -4.4239 1.3254 0.7807 C.2 1 LGD 0.6061
8 C8 -3.0359 1.8657 0.5131 C.ar 1 LGD -0.1950
9 C9 -2.8063 2.6696 -0.6255 C.ar 1 LGD -0.1802
10 C10 -3.9416 2.9135 -1.5989 C.2 1 LGD 0.6029
11 C11 -1.9642 1.5781 1.3919 C.ar 1 LGD 0.1656
12 C12 -0.6733 2.0960 1.1560 C.ar 1 LGD -0.0903
13 C13 -0.4501 2.9417 0.0442 C.ar 1 LGD -0.0301
14 C14 -1.5173 3.2225 -0.8387 C.ar 1 LGD 0.1574
15 C15 0.4760 1.6649 2.0765 C.3 1 LGD 0.2154
16 C16 1.7370 2.5639 1.9544 C.3 1 LGD -0.1411
17 C17 2.1159 2.8665 0.4830 C.3 1 LGD 0.0783
18 C18 0.9250 3.5963 -0.1943 C.3 1 LGD -0.0457
19 O1 -6.6997 -0.4639 0.7518 O.3 1 LGD -0.3388
20 C19 -7.8321 -1.3376 0.9023 C.3 1 LGD 0.1375
21 O2 -4.7849 1.0573 1.9153 O.2 1 LGD -0.5175
22 O3 -3.9151 3.8260 -2.4092 O.2 1 LGD -0.5197
23 O4 -1.2865 4.0301 -1.9192 O.3 1 LGD -0.4977
24 O5 -2.1656 0.7659 2.4758 O.3 1 LGD -0.5256
25 O6 0.7905 0.2990 1.7168 O.3 1 LGD -0.4471
26 C20 1.6539 -0.4407 2.5988 C.3 1 LGD 0.3678
27 C21 3.4269 3.6941 0.4065 C.2 1 LGD 0.5448
28 C22 4.7063 3.0116 0.9246 C.3 1 LGD 0.0468
29 O7 5.2367 3.7501 2.0241 O.3 1 LGD -0.5886
30 O8 3.4671 4.8233 -0.0550 O.2 1 LGD -0.4934
31 O9 2.3467 1.6495 -0.2178 O.3 1 LGD -0.6205
32 C23 1.0947 -1.8717 2.7522 C.3 1 LGD -0.1256
33 C24 1.0708 -2.6466 1.4061 C.3 1 LGD 0.1145
34 C25 2.1917 -2.2130 0.4165 C.3 1 LGD 0.1156
35 C26 3.4054 -1.5288 1.1296 C.3 1 LGD 0.1369
36 O10 2.9891 -0.4620 2.0298 O.3 1 LGD -0.4261
37 N1 1.1788 -4.0906 1.6855 N.4 1 LGD -0.8220
38 C27 4.2650 -2.5399 1.9277 C.3 1 LGD -0.1266
39 O11 1.5788 -1.3098 -0.5332 O.3 1 LGD -0.4070
40 C28 2.3085 -0.9881 -1.7389 C.3 1 LGD 0.1829
41 C29 2.5845 -2.2367 -2.5628 C.ar 1 LGD -0.1623
42 C30 3.9040 -2.6995 -2.7193 C.ar 1 LGD -0.1206
43 C31 4.1665 -3.8330 -3.5043 C.ar 1 LGD -0.1302
44 C32 3.1111 -4.5091 -4.1364 C.ar 1 LGD -0.1118
45 C33 1.7924 -4.0526 -3.9803 C.ar 1 LGD -0.1302
46 C34 1.5293 -2.9184 -3.1950 C.ar 1 LGD -0.1206
47 H1 -7.7754 0.9931 -3.4599 H 1 LGD 0.1513
48 H2 -8.2085 -0.4006 -1.4812 H 1 LGD 0.1495
49 H3 -5.8262 2.5085 -3.5270 H 1 LGD 0.1613
50 H4 0.1334 1.6975 3.1189 H 1 LGD 0.0700
51 H5 1.5323 3.5150 2.4630 H 1 LGD 0.0760
52 H6 2.5783 2.1186 2.4976 H 1 LGD 0.0760
53 H7 0.8742 4.6259 0.1826 H 1 LGD 0.0895
54 H8 1.1414 3.6766 -1.2676 H 1 LGD 0.0895
55 H9 -7.7894 -1.8355 1.8788 H 1 LGD 0.0478
56 H10 -8.7659 -0.7644 0.8440 H 1 LGD 0.0478
57 H11 -7.8290 -2.1056 0.1188 H 1 LGD 0.0478
58 H12 -2.1331 4.1493 -2.3904 H 1 LGD 0.4650
59 H13 -3.1250 0.6019 2.5497 H 1 LGD 0.4642
60 H14 1.6823 0.0486 3.5799 H 1 LGD 0.1045
61 H15 4.4838 1.9819 1.2308 H 1 LGD 0.0702
62 H16 5.4305 2.9702 0.1015 H 1 LGD 0.0702
63 H17 5.4174 4.6531 1.7070 H 1 LGD 0.4226
64 H18 1.7849 0.9682 0.2005 H 1 LGD 0.4402
65 H19 1.6917 -2.4042 3.5023 H 1 LGD 0.0781
66 H20 0.0760 -1.8230 3.1573 H 1 LGD 0.0781
67 H21 0.1103 -2.4658 0.9184 H 1 LGD 0.1417
68 H22 2.5478 -3.1017 -0.1198 H 1 LGD 0.0515
69 H23 4.0664 -1.0982 0.3687 H 1 LGD 0.1056
70 H24 1.1116 -4.6106 0.8217 H 1 LGD 0.4568
71 H25 2.0649 -4.2875 2.1285 H 1 LGD 0.4568
72 H26 4.6505 -3.3218 1.2614 H 1 LGD 0.0475
73 H27 5.1264 -2.0328 2.3802 H 1 LGD 0.0475
74 H28 3.7014 -3.0289 2.7291 H 1 LGD 0.0475
75 H29 1.7133 -0.2908 -2.3419 H 1 LGD 0.0860
76 H30 3.2517 -0.4846 -1.4970 H 1 LGD 0.0860
77 H31 4.7269 -2.1764 -2.2398 H 1 LGD 0.1364
78 H32 5.1877 -4.1823 -3.6276 H 1 LGD 0.1441
79 H33 3.3155 -5.3824 -4.7492 H 1 LGD 0.1459
80 H34 0.9759 -4.5730 -4.4726 H 1 LGD 0.1441
81 H35 0.5080 -2.5642 -3.0838 H 1 LGD 0.1364
82 H36 0.4288 -4.3728 2.3010 H 1 LGD 0.4568
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 ar
10 9 10 1
11 5 10 1
12 8 11 ar
13 11 12 ar
14 12 13 ar
15 13 14 ar
16 9 14 ar
17 12 15 1
18 15 16 1
19 16 17 1
20 17 18 1
21 13 18 1
22 3 19 1
23 19 20 1
24 7 21 2
25 10 22 2
26 14 23 1
27 11 24 1
28 25 26 1
29 15 25 1
30 17 27 1
31 27 28 1
32 28 29 1
33 27 30 2
34 17 31 1
35 26 32 1
36 32 33 1
37 33 34 1
38 34 35 1
39 35 36 1
40 26 36 1
41 33 37 1
42 35 38 1
43 34 39 1
44 39 40 1
45 40 41 1
46 41 42 ar
47 42 43 ar
48 43 44 ar
49 44 45 ar
50 45 46 ar
51 41 46 ar
52 1 47 1
53 2 48 1
54 6 49 1
55 15 50 1
56 16 51 1
57 16 52 1
58 18 53 1
59 18 54 1
60 20 55 1
61 20 56 1
62 20 57 1
63 23 58 1
64 24 59 1
65 26 60 1
66 28 61 1
67 28 62 1
68 29 63 1
69 31 64 1
70 32 65 1
71 32 66 1
72 33 67 1
73 34 68 1
74 35 69 1
75 37 70 1
76 37 71 1
77 38 72 1
78 38 73 1
79 38 74 1
80 40 75 1
81 40 76 1
82 42 77 1
83 43 78 1
84 44 79 1
85 45 80 1
86 46 81 1
87 37 82 1