@COMMENT
LIGANDBOX_ID = D08871-05
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D08871
NAME = Berubicin_hydrochloride_(USAN)
MOLECULAR_FORMULA = C34H35NO11
MOLECULAR_WEIGHT = 633.650
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 6
NUM_OF_ACCEPTOR = 11
NUM_OF_CHIRAL_ATOMS = 6
TPSA = 195.0700
HOMO = -10.9670
LUMO = -3.7228
mLOGS = -0.231
mLOGPA = -6.223
mLOGD = 0.690
@MOLECULE
D08871-05
82 87 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 -6.7617 0.7051 -2.5725 C.ar 1 LGD -0.0724
2 C2 -6.9970 -0.0675 -1.4292 C.ar 1 LGD -0.1940
3 C3 -6.1197 0.0084 -0.3255 C.ar 1 LGD 0.1975
4 C4 -4.9943 0.8720 -0.3783 C.ar 1 LGD -0.1622
5 C5 -4.7609 1.6383 -1.5391 C.ar 1 LGD -0.1022
6 C6 -5.6504 1.5535 -2.6280 C.ar 1 LGD -0.1162
7 C7 -4.0450 1.0102 0.7857 C.2 1 LGD 0.6054
8 C8 -2.6518 1.5244 0.4930 C.ar 1 LGD -0.1973
9 C9 -2.4250 2.2968 -0.6676 C.ar 1 LGD -0.1822
10 C10 -3.5712 2.5506 -1.6237 C.2 1 LGD 0.6008
11 C11 -1.5738 1.2460 1.3684 C.ar 1 LGD 0.1670
12 C12 -0.2753 1.7285 1.0982 C.ar 1 LGD -0.0950
13 C13 -0.0519 2.5225 -0.0526 C.ar 1 LGD -0.0287
14 C14 -1.1281 2.8080 -0.9214 C.ar 1 LGD 0.1526
15 C15 0.8787 1.3229 2.0313 C.3 1 LGD 0.2205
16 C16 2.1661 2.1626 1.8164 C.3 1 LGD -0.1429
17 C17 2.5093 2.3535 0.3156 C.3 1 LGD 0.0746
18 C18 1.3375 3.1120 -0.3561 C.3 1 LGD -0.0458
19 O1 -6.3329 -0.7656 0.8018 O.3 1 LGD -0.3386
20 C19 -7.4644 -1.6375 0.9687 C.3 1 LGD 0.1369
21 O2 -4.3993 0.7699 1.9286 O.2 1 LGD -0.5141
22 O3 -3.5462 3.4586 -2.4391 O.2 1 LGD -0.5177
23 O4 -0.8989 3.5779 -2.0296 O.3 1 LGD -0.5009
24 O5 -1.7772 0.4784 2.4837 O.3 1 LGD -0.5228
25 O6 1.1440 -0.0743 1.7689 O.3 1 LGD -0.4728
26 C20 2.0083 -0.7984 2.6718 C.3 1 LGD 0.3593
27 C21 3.8593 3.0988 0.1391 C.2 1 LGD 0.5437
28 C22 5.1027 2.4337 0.7536 C.3 1 LGD 0.0447
29 O7 5.5401 3.1860 1.8846 O.3 1 LGD -0.5874
30 O8 3.9529 4.1585 -0.4590 O.2 1 LGD -0.4895
31 O9 2.6332 1.0861 -0.3231 O.3 1 LGD -0.6072
32 C23 1.4404 -2.2348 2.8187 C.3 1 LGD -0.1262
33 C24 1.3787 -2.9747 1.4467 C.3 1 LGD 0.0835
34 C25 2.4168 -2.3857 0.4442 C.3 1 LGD 0.0872
35 C26 3.6936 -1.9589 1.2096 C.3 1 LGD 0.1694
36 O10 3.3514 -0.8553 2.1009 O.3 1 LGD -0.4300
37 N1 1.6365 -4.4104 1.6716 N.4 1 LGD -0.8161
38 C27 4.8362 -1.4897 0.2789 C.3 1 LGD -0.0909
39 O11 2.7316 -3.3377 -0.6010 O.3 1 LGD -0.4337
40 C28 1.6894 -3.5663 -1.5811 C.3 1 LGD 0.1780
41 C29 1.2238 -2.2414 -2.1849 C.ar 1 LGD -0.1687
42 C30 -0.0814 -1.7709 -1.9414 C.ar 1 LGD -0.1105
43 C31 -0.4856 -0.5171 -2.4280 C.ar 1 LGD -0.1160
44 C32 0.4126 0.2745 -3.1603 C.ar 1 LGD -0.0963
45 C33 1.7141 -0.1897 -3.4081 C.ar 1 LGD -0.1160
46 C34 2.1191 -1.4437 -2.9217 C.ar 1 LGD -0.1105
47 H1 -7.4395 0.6425 -3.4193 H 1 LGD 0.1528
48 H2 -7.8631 -0.7213 -1.4179 H 1 LGD 0.1509
49 H3 -5.4786 2.1409 -3.5260 H 1 LGD 0.1616
50 H4 0.5579 1.4429 3.0743 H 1 LGD 0.0742
51 H5 2.0124 3.1517 2.2673 H 1 LGD 0.0798
52 H6 3.0040 1.7205 2.3666 H 1 LGD 0.0798
53 H7 1.3445 4.1571 -0.0203 H 1 LGD 0.0896
54 H8 1.5249 3.1375 -1.4376 H 1 LGD 0.0896
55 H9 -7.4158 -2.1250 1.9501 H 1 LGD 0.0486
56 H10 -8.3986 -1.0649 0.9096 H 1 LGD 0.0486
57 H11 -7.4660 -2.4136 0.1932 H 1 LGD 0.0486
58 H12 -1.7564 3.7321 -2.4701 H 1 LGD 0.4653
59 H13 -2.7387 0.3365 2.5756 H 1 LGD 0.4655
60 H14 2.0357 -0.2975 3.6470 H 1 LGD 0.1121
61 H15 4.8649 1.4049 1.0494 H 1 LGD 0.0716
62 H16 5.8880 2.3947 -0.0114 H 1 LGD 0.0716
63 H17 5.7350 4.0891 1.5765 H 1 LGD 0.4219
64 H18 2.0761 0.4679 0.1862 H 1 LGD 0.4248
65 H19 2.0764 -2.7851 3.5246 H 1 LGD 0.0811
66 H20 0.4382 -2.1974 3.2638 H 1 LGD 0.0811
67 H21 0.3824 -2.8603 1.0143 H 1 LGD 0.1240
68 H22 2.0028 -1.4781 -0.0055 H 1 LGD 0.1317
69 H23 4.0560 -2.8061 1.8055 H 1 LGD 0.0270
70 H24 1.6427 -4.8897 0.7819 H 1 LGD 0.4576
71 H25 2.5385 -4.5290 2.1098 H 1 LGD 0.4576
72 H26 5.6483 -1.0342 0.8592 H 1 LGD 0.0668
73 H27 5.2547 -2.3380 -0.2768 H 1 LGD 0.0668
74 H28 4.4814 -0.7549 -0.4528 H 1 LGD 0.0668
75 H29 2.0740 -4.2134 -2.3792 H 1 LGD 0.0541
76 H30 0.8412 -4.0813 -1.1129 H 1 LGD 0.0541
77 H31 -0.7790 -2.3694 -1.3622 H 1 LGD 0.1292
78 H32 -1.4919 -0.1577 -2.2331 H 1 LGD 0.1455
79 H33 0.1023 1.2464 -3.5332 H 1 LGD 0.1511
80 H34 2.4119 0.4259 -3.9685 H 1 LGD 0.1455
81 H35 3.1342 -1.7876 -3.1004 H 1 LGD 0.1292
82 H36 0.9188 -4.8015 2.2652 H 1 LGD 0.4576
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 ar
10 9 10 1
11 5 10 1
12 8 11 ar
13 11 12 ar
14 12 13 ar
15 13 14 ar
16 9 14 ar
17 12 15 1
18 15 16 1
19 16 17 1
20 17 18 1
21 13 18 1
22 3 19 1
23 19 20 1
24 7 21 2
25 10 22 2
26 14 23 1
27 11 24 1
28 25 26 1
29 15 25 1
30 17 27 1
31 27 28 1
32 28 29 1
33 27 30 2
34 17 31 1
35 26 32 1
36 32 33 1
37 33 34 1
38 34 35 1
39 35 36 1
40 26 36 1
41 33 37 1
42 35 38 1
43 34 39 1
44 39 40 1
45 40 41 1
46 41 42 ar
47 42 43 ar
48 43 44 ar
49 44 45 ar
50 45 46 ar
51 41 46 ar
52 1 47 1
53 2 48 1
54 6 49 1
55 15 50 1
56 16 51 1
57 16 52 1
58 18 53 1
59 18 54 1
60 20 55 1
61 20 56 1
62 20 57 1
63 23 58 1
64 24 59 1
65 26 60 1
66 28 61 1
67 28 62 1
68 29 63 1
69 31 64 1
70 32 65 1
71 32 66 1
72 33 67 1
73 34 68 1
74 35 69 1
75 37 70 1
76 37 71 1
77 38 72 1
78 38 73 1
79 38 74 1
80 40 75 1
81 40 76 1
82 42 77 1
83 43 78 1
84 44 79 1
85 45 80 1
86 46 81 1
87 37 82 1