@COMMENT
LIGANDBOX_ID = D09647-01
SOURCE = KEGG_MEDICUS
COPYRIGHT = KEGG_MEDICUS_(C)_Minoru_Kanehisa_(Institute_for_Chemical_Research,_Kyoto_University)_licensed_under_CC_Attribution-Share_Alike_4.0_International
ENTRY = D09647
NAME = Omadacycline_(USAN)
MOLECULAR_FORMULA = C29H40N4O7
MOLECULAR_WEIGHT = 556.660
MOLECULAR_CHARGE = 0
NUM_OF_DONOR = 7
NUM_OF_ACCEPTOR = 7
NUM_OF_CHIRAL_ATOMS = 4
TPSA = 176.6600
HOMO = -13.2386
LUMO = -6.4769
mLOGS = -0.292
mLOGD = -0.289
mLOGPA = -4.762
@MOLECULE
D09647-01
82 85 0 0 0
SMALL
MOPAC_AM1BCC
@ATOM
1 C1 20.2150 -26.8390 -1.5950 C.ar 1 LGD -0.2028
2 C2 20.3520 -25.4440 -1.6210 C.ar 1 LGD -0.1113
3 C3 21.5940 -24.8320 -1.3990 C.ar 1 LGD 0.1388
4 C4 22.7350 -25.6340 -1.1610 C.ar 1 LGD 0.0137
5 C5 22.6160 -27.0450 -1.1140 C.ar 1 LGD -0.2381
6 C6 21.3460 -27.6420 -1.3370 C.ar 1 LGD 0.2228
7 C7 24.1150 -25.0000 -0.9810 C.3 1 LGD -0.0324
8 C8 25.1980 -25.8740 -1.6440 C.3 1 LGD -0.0024
9 C9 25.2130 -27.2550 -0.9590 C.2 1 LGD -0.2726
10 C10 23.8450 -27.8850 -0.7870 C.2 1 LGD 0.6166
11 C11 26.5780 -25.1480 -1.6840 C.3 1 LGD -0.0833
12 C12 27.5280 -25.6530 -0.5770 C.3 1 LGD -0.1196
13 C13 27.7450 -27.1860 -0.7010 C.3 1 LGD 0.0474
14 C14 26.3690 -27.8540 -0.5340 C.2 1 LGD 0.1561
15 C15 28.8650 -24.8750 -0.4420 C.3 1 LGD 0.1336
16 C16 29.5270 -25.3660 0.8410 C.2 1 LGD 0.0867
17 C17 29.4660 -26.6720 1.2440 C.2 1 LGD -0.2032
18 C18 28.8240 -27.6820 0.3170 C.2 1 LGD 0.5683
19 C19 18.8240 -27.4430 -1.8220 C.3 1 LGD 0.1763
20 N1 17.8480 -26.8690 -0.8780 N.4 1 LGD -0.7432
21 C20 18.0850 -27.1240 0.5570 C.3 1 LGD 0.0894
22 C21 17.1540 -26.2620 1.4620 C.3 1 LGD -0.0785
23 C22 17.4700 -26.5920 2.9460 C.3 1 LGD -0.0995
24 C23 15.6600 -26.5880 1.1810 C.3 1 LGD -0.0995
25 C24 17.4170 -24.7480 1.2180 C.3 1 LGD -0.0995
26 O1 23.7100 -29.0210 -0.3650 O.2 1 LGD -0.5045
27 O2 26.4010 -29.0610 0.0580 O.3 1 LGD -0.4327
28 O3 21.2030 -29.0030 -1.3140 O.3 1 LGD -0.5059
29 O4 29.1180 -28.8660 0.3720 O.2 1 LGD -0.3935
30 O5 28.2370 -27.5230 -2.0050 O.3 1 LGD -0.5902
31 N2 29.7310 -24.9710 -1.6600 N.4 1 LGD -0.6897
32 C25 30.1150 -27.1500 2.5310 C.2 1 LGD 0.6671
33 N3 30.8180 -26.3010 3.3620 N.am 1 LGD -0.6737
34 O6 30.0430 -28.3030 2.9130 O.2 1 LGD -0.5351
35 N4 21.6720 -23.4380 -1.3980 N.pl3 1 LGD -0.7535
36 C26 21.1280 -22.6540 -2.5190 C.3 1 LGD 0.2125
37 C27 21.7410 -22.7110 -0.1200 C.3 1 LGD 0.2125
38 O7 30.1020 -24.3710 1.5390 O.3 1 LGD -0.4543
39 C28 31.1510 -25.3350 -1.4500 C.3 1 LGD 0.0823
40 C29 29.5930 -23.8260 -2.5840 C.3 1 LGD 0.0823
41 H1 19.4770 -24.8260 -1.8010 H 1 LGD 0.1334
42 H2 24.1510 -24.0010 -1.4350 H 1 LGD 0.0725
43 H3 24.3360 -24.8720 0.0860 H 1 LGD 0.0725
44 H4 24.8940 -26.0180 -2.6890 H 1 LGD 0.0806
45 H5 27.0310 -25.3130 -2.6690 H 1 LGD 0.0528
46 H6 26.4470 -24.0620 -1.5910 H 1 LGD 0.0528
47 H7 26.9990 -25.4810 0.3710 H 1 LGD 0.1205
48 H8 28.6010 -23.8200 -0.2880 H 1 LGD 0.1126
49 H9 18.5050 -27.2160 -2.8470 H 1 LGD 0.1181
50 H10 18.8340 -28.5340 -1.7110 H 1 LGD 0.1181
51 H11 16.9180 -27.1830 -1.1180 H 1 LGD 0.4524
52 H12 17.9270 -28.1890 0.7660 H 1 LGD 0.1066
53 H13 19.1280 -26.8870 0.8050 H 1 LGD 0.1066
54 H14 16.8410 -26.0010 3.6250 H 1 LGD 0.0542
55 H15 17.2910 -27.6540 3.1590 H 1 LGD 0.0542
56 H16 18.5190 -26.3720 3.1830 H 1 LGD 0.0542
57 H17 15.0040 -26.0450 1.8730 H 1 LGD 0.0542
58 H18 15.3720 -26.3030 0.1600 H 1 LGD 0.0542
59 H19 15.4630 -27.6610 1.3010 H 1 LGD 0.0542
60 H20 18.4770 -24.5040 1.3680 H 1 LGD 0.0542
61 H21 17.1460 -24.4530 0.1960 H 1 LGD 0.0542
62 H22 16.8280 -24.1310 1.9080 H 1 LGD 0.0542
63 H23 27.3380 -29.3080 0.1840 H 1 LGD 0.4664
64 H24 22.0540 -29.3880 -1.0250 H 1 LGD 0.4836
65 H25 27.5990 -27.1880 -2.6580 H 1 LGD 0.4365
66 H26 30.9120 -25.3250 3.1190 H 1 LGD 0.3369
67 H27 31.2280 -26.6610 4.2110 H 1 LGD 0.3369
68 H28 20.0680 -22.4250 -2.3460 H 1 LGD 0.0404
69 H29 21.6830 -21.7140 -2.6280 H 1 LGD 0.0404
70 H30 21.2220 -23.2170 -3.4560 H 1 LGD 0.0404
71 H31 22.4310 -21.8620 -0.2030 H 1 LGD 0.0404
72 H32 20.7470 -22.3400 0.1620 H 1 LGD 0.0404
73 H33 22.1050 -23.3730 0.6770 H 1 LGD 0.0404
74 H34 30.0800 -23.5660 0.9910 H 1 LGD 0.4429
75 H35 31.2320 -26.2990 -0.9330 H 1 LGD 0.1092
76 H36 31.6650 -25.4300 -2.4140 H 1 LGD 0.1092
77 H37 31.6630 -24.5660 -0.8570 H 1 LGD 0.1092
78 H38 30.1040 -24.0380 -3.5310 H 1 LGD 0.1092
79 H39 28.5400 -23.6200 -2.8050 H 1 LGD 0.1092
80 H40 30.0370 -22.9250 -2.1430 H 1 LGD 0.1092
81 H41 17.9430 -25.8735 -0.8766 H 1 LGD 0.4524
82 H42 29.6517 -25.8909 -2.0442 H 1 LGD 0.4721
@BOND
1 1 2 ar
2 2 3 ar
3 3 4 ar
4 4 5 ar
5 5 6 ar
6 1 6 ar
7 4 7 1
8 7 8 1
9 8 9 1
10 9 10 1
11 5 10 1
12 8 11 1
13 11 12 1
14 12 13 1
15 13 14 1
16 9 14 2
17 12 15 1
18 15 16 1
19 16 17 2
20 17 18 1
21 13 18 1
22 1 19 1
23 19 20 1
24 20 21 1
25 21 22 1
26 22 23 1
27 22 24 1
28 22 25 1
29 10 26 2
30 14 27 1
31 6 28 1
32 18 29 2
33 13 30 1
34 15 31 1
35 17 32 1
36 32 33 am
37 32 34 2
38 3 35 1
39 35 36 1
40 35 37 1
41 16 38 1
42 31 39 1
43 31 40 1
44 2 41 1
45 7 42 1
46 7 43 1
47 8 44 1
48 11 45 1
49 11 46 1
50 12 47 1
51 15 48 1
52 19 49 1
53 19 50 1
54 20 51 1
55 21 52 1
56 21 53 1
57 23 54 1
58 23 55 1
59 23 56 1
60 24 57 1
61 24 58 1
62 24 59 1
63 25 60 1
64 25 61 1
65 25 62 1
66 27 63 1
67 28 64 1
68 30 65 1
69 33 66 1
70 33 67 1
71 36 68 1
72 36 69 1
73 36 70 1
74 37 71 1
75 37 72 1
76 37 73 1
77 38 74 1
78 39 75 1
79 39 76 1
80 39 77 1
81 40 78 1
82 40 79 1
83 40 80 1
84 20 81 1
85 31 82 1